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Report for CCDS5681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5681.1 Public Homo sapiens 7 ZSCAN21 24 110 108 CCDS HistoryNCBI Gene:7589Re-query CCDS DB by CCDS ID:5681.1Re-query CCDS DB by GeneID:7589See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5681.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292450.9 ENSP00000292450.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292450.9Link to Ensembl Protein Viewer:ENSP00000292450.4Re-query CCDS DB by Nucleotide ID:ENST00000292450Re-query CCDS DB by Protein ID:ENSP00000292450
Original member Current member NCBI NM_001362779.2 NP_001349708.1 Accepted alive Link to Nucleotide Sequence:NM_001362779.2Link to Protein Sequence:NP_001349708.1Re-query CCDS DB by Nucleotide ID:NM_001362779Re-query CCDS DB by Protein ID:NP_001349708Link to BLAST:NP_001349708.1
Original member Current member NCBI NM_001362780.2 NP_001349709.1 Accepted alive Link to Nucleotide Sequence:NM_001362780.2Link to Protein Sequence:NP_001349709.1Re-query CCDS DB by Nucleotide ID:NM_001362780Re-query CCDS DB by Protein ID:NP_001349709Link to BLAST:NP_001349709.1
Original member Current member NCBI NM_145914.3 NP_666019.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145914.3Link to Protein Sequence:NP_666019.1Re-query CCDS DB by Nucleotide ID:NM_145914Re-query CCDS DB by Protein ID:NP_666019Link to BLAST:NP_666019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349708.1 473 Q9Y5A6 473 100% 0 0
NP_001349709.1 473 Q9Y5A6 473 100% 0 0
NP_666019.1 473 Q9Y5A6 473 100% 0 0

Chromosomal Locations for CCDS 5681.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100057007 100057405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100057698 100057890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100063788 100064617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGATGACCAAGGTACTAGGCATGGCCCCAGTTCTGGGCCCTAGGCCTCCACAGGAGCAGGTGGGGCCTC
TGATGGTAAAAGTCGAGGAGAAAGAAGAGAAAGGCAAGTACCTTCCTAGCCTGGAGATGTTCCGCCAGCG
CTTCAGGCAGTTTGGGTACCATGATACCCCTGGACCCCGAGAGGCCCTGAGCCAACTCCGGGTGCTCTGC
TGTGAGTGGCTGAGGCCCGAGATCCACACCAAGGAGCAGATCCTGGAGCTACTGGTGCTGGAGCAGTTCC
TGACCATCCTGCCCCAGGAGCTCCAGGCCTGGGTGCAGGAGCATTGCCCGGAGAGCGCTGAAGAGGCTGT
CACTCTCCTCGAAGATCTGGAGCGGGAACTGGATGAGCCAGGACACCAGGTCTCAACTCCTCCAAACGAA
CAGAAACCGGTGTGGGAGAAGATATCCTCCTCAGGAACTGCAAAGGAATCCCCGAGCAGCATGCAGCCAC
AGCCCTTGGAGACCAGTCACAAATACGAGTCTTGGGGGCCCCTGTACATCCAAGAGTCTGGTGAGGAGCA
GGAGTTCGCTCAAGATCCAAGAAAGGTCCGAGATTGCAGATTGAGTACCCAGCACGAGGAATCAGCAGAT
GAGCAGAAAGGTTCTGAAGCAGAGGGGCTCAAAGGGGATATAATTTCTGTGATTATCGCCAATAAACCTG
AGGCCAGCTTAGAGAGGCAGTGCGTAAACCTTGAAAATGAAAAAGGAACAAAACCCCCTCTTCAAGAGGC
AGGCTCCAAGAAAGGTAGAGAATCAGTTCCTACTAAACCTACCCCAGGAGAGAGACGTTATATATGTGCT
GAATGTGGCAAAGCCTTTAGTAATAGCTCAAATCTCACCAAACACAGGAGAACACACACTGGGGAGAAAC
CTTACGTGTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCAAACCTCACCCTCCACTACAGAACACA
CTTGGTGGACCGGCCCTATGACTGTAAGTGTGGAAAAGCTTTTGGGCAGAGCTCAGACCTTCTTAAACAT
CAGAGAATGCACACAGAAGAGGCGCCATATCAGTGCAAAGATTGTGGCAAGGCTTTCAGCGGGAAAGGCA
GCCTCATTCGTCACTATCGGATCCACACTGGGGAGAAGCCTTATCAGTGTAACGAATGTGGGAAGAGCTT
CAGTCAGCATGCGGGCCTCAGCTCCCACCAGAGACTCCACACCGGAGAGAAGCCATATAAGTGTAAGGAG
TGTGGGAAAGCCTTCAACCACAGCTCCAACTTCAATAAACACCACAGAATCCACACCGGGGAAAAGCCCT
ACTGGTGTCATCACTGTGGAAAGACCTTCTGTAGCAAGTCCAATCTTTCCAAACATCAGCGAGTCCACAC
TGGAGAGGGAGAAGCACCGTAA

Translation (473 aa):
MMTKVLGMAPVLGPRPPQEQVGPLMVKVEEKEEKGKYLPSLEMFRQRFRQFGYHDTPGPREALSQLRVLC
CEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLERELDEPGHQVSTPPNE
QKPVWEKISSSGTAKESPSSMQPQPLETSHKYESWGPLYIQESGEEQEFAQDPRKVRDCRLSTQHEESAD
EQKGSEAEGLKGDIISVIIANKPEASLERQCVNLENEKGTKPPLQEAGSKKGRESVPTKPTPGERRYICA
ECGKAFSNSSNLTKHRRTHTGEKPYVCTKCGKAFSHSSNLTLHYRTHLVDRPYDCKCGKAFGQSSDLLKH
QRMHTEEAPYQCKDCGKAFSGKGSLIRHYRIHTGEKPYQCNECGKSFSQHAGLSSHQRLHTGEKPYKCKE
CGKAFNHSSNFNKHHRIHTGEKPYWCHHCGKTFCSKSNLSKHQRVHTGEGEAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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