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Report for CCDS5198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5198.1 Public Homo sapiens 6 AIG1 24 110 108 CCDS HistoryNCBI Gene:51390Re-query CCDS DB by CCDS ID:5198.1Re-query CCDS DB by GeneID:51390See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5198.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357847.9 ENSP00000350509.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357847.9Link to Ensembl Protein Viewer:ENSP00000350509.4Re-query CCDS DB by Nucleotide ID:ENST00000357847Re-query CCDS DB by Protein ID:ENSP00000350509
Original member Current member NCBI NM_016108.4 NP_057192.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016108.4Link to Protein Sequence:NP_057192.2Re-query CCDS DB by Nucleotide ID:NM_016108Re-query CCDS DB by Protein ID:NP_057192Link to BLAST:NP_057192.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057192.2 238 Q9NVV5-2 238 100% 0 0

Chromosomal Locations for CCDS 5198.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143060926 143061066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143136835 143136990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143165082 143165183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143284110 143284225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143333282 143333445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143339639 143339676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCGCTTGTCCCCTGCCAGGTGCTGCGGATGGCAATCCTGCTGTCTTACTGCTCTATCCTGTGTAACT
ACAAGGCCATCGAAATGCCCTCACACCAGACCTACGGAGGGAGCTGGAAATTCCTGACGTTCATTGATCT
GGTTATCCAGGCTGTCTTTTTTGGCATCTGTGTGCTGACTGATCTTTCCAGTCTTCTGACTCGAGGAAGT
GGGAACCAGGAGCAAGAGAGGCAGCTCAAGAAGCTCATCTCTCTCCGGGACTGGATGTTAGCTGTGTTGG
CCTTTCCTGTTGGGGTTTTTGTTGTAGCAGTGTTCTGGATCATTTATGCCTATGACAGAGAGATGATATA
CCCGAAGCTGCTGGATAATTTTATCCCAGGGTGGCTGAATCACGGAATGCACACGACGGTTCTGCCCTTT
ATATTAATCGAGATGAGGACATCGCACCATCAGTATCCCAGCAGGAGCAGCGGACTTACCGCCATATGTA
CCTTCTCTGTTGGCTATATATTATGGGTGTGCTGGGTGCATCATGTAACTGGCATGTGGGTGTACCCTTT
CCTGGAACACATTGGCCCAGGAGCCAGAATCATCTTCTTTGGGTCTACAACCATCTTAATGAACTTCCTG
TACCTGCTGGGAGAAGTTCTGAACAACTATATCTGGGATACACAGAAAAGTATGGAAGAAGAGAAAGAAA
AGCCTAAATTGGAATGA

Translation (238 aa):
MALVPCQVLRMAILLSYCSILCNYKAIEMPSHQTYGGSWKFLTFIDLVIQAVFFGICVLTDLSSLLTRGS
GNQEQERQLKKLISLRDWMLAVLAFPVGVFVVAVFWIIYAYDREMIYPKLLDNFIPGWLNHGMHTTVLPF
ILIEMRTSHHQYPSRSSGLTAICTFSVGYILWVCWVHHVTGMWVYPFLEHIGPGARIIFFGSTTILMNFL
YLLGEVLNNYIWDTQKSMEEEKEKPKLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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