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Report for CCDS93968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93968.1 Public Homo sapiens 6 RARS2 24 110 108 CCDS HistoryNCBI Gene:57038Re-query CCDS DB by CCDS ID:93968.1Re-query CCDS DB by GeneID:57038See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93968.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000685408.1 ENSP00000509026.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685408.1Link to Ensembl Protein Viewer:ENSP00000509026.1Re-query CCDS DB by Nucleotide ID:ENST00000685408Re-query CCDS DB by Protein ID:ENSP00000509026
Original member Current member EBI ENST00000693327.1 ENSP00000509195.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693327.1Link to Ensembl Protein Viewer:ENSP00000509195.1Re-query CCDS DB by Nucleotide ID:ENST00000693327Re-query CCDS DB by Protein ID:ENSP00000509195
Original member Current member EBI ENST00000692684.1 ENSP00000509712.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692684.1Link to Ensembl Protein Viewer:ENSP00000509712.1Re-query CCDS DB by Nucleotide ID:ENST00000692684Re-query CCDS DB by Protein ID:ENSP00000509712
Original member Current member EBI ENST00000689174.1 ENSP00000510542.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689174.1Link to Ensembl Protein Viewer:ENSP00000510542.1Re-query CCDS DB by Nucleotide ID:ENST00000689174Re-query CCDS DB by Protein ID:ENSP00000510542
Original member Current member NCBI NM_001318785.2 NP_001305714.1 Accepted alive Link to Nucleotide Sequence:NM_001318785.2Link to Protein Sequence:NP_001305714.1Re-query CCDS DB by Nucleotide ID:NM_001318785Re-query CCDS DB by Protein ID:NP_001305714Link to BLAST:NP_001305714.1
Original member Current member NCBI NM_001350507.2 NP_001337436.1 Accepted alive Link to Nucleotide Sequence:NM_001350507.2Link to Protein Sequence:NP_001337436.1Re-query CCDS DB by Nucleotide ID:NM_001350507Re-query CCDS DB by Protein ID:NP_001337436Link to BLAST:NP_001337436.1
Original member Current member NCBI NM_001350508.2 NP_001337437.1 Accepted alive Link to Nucleotide Sequence:NM_001350508.2Link to Protein Sequence:NP_001337437.1Re-query CCDS DB by Nucleotide ID:NM_001350508Re-query CCDS DB by Protein ID:NP_001337437Link to BLAST:NP_001337437.1
Original member Current member NCBI NM_001350509.2 NP_001337438.1 Accepted alive Link to Nucleotide Sequence:NM_001350509.2Link to Protein Sequence:NP_001337438.1Re-query CCDS DB by Nucleotide ID:NM_001350509Re-query CCDS DB by Protein ID:NP_001337438Link to BLAST:NP_001337438.1
Original member Current member NCBI NM_001350510.2 NP_001337439.1 Accepted alive Link to Nucleotide Sequence:NM_001350510.2Link to Protein Sequence:NP_001337439.1Re-query CCDS DB by Nucleotide ID:NM_001350510Re-query CCDS DB by Protein ID:NP_001337439Link to BLAST:NP_001337439.1
Original member Current member NCBI NM_001350511.2 NP_001337440.1 Accepted alive Link to Nucleotide Sequence:NM_001350511.2Link to Protein Sequence:NP_001337440.1Re-query CCDS DB by Nucleotide ID:NM_001350511Re-query CCDS DB by Protein ID:NP_001337440Link to BLAST:NP_001337440.1

Chromosomal Locations for CCDS 93968.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87514413 87514499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87514957 87515020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87516806 87516880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87518169 87518264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87518630 87518739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87518824 87518891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87519583 87519707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87520180 87520256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87521464 87521524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87524557 87524652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87529542 87529648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87530784 87530942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87541918 87541994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87545616 87545625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGCAGTTTGGTCTTCTGGGAACTGGCTTCCAGCTGTTTGGCTATGAGGAAAAACTGCAGTCCAATCCTC
TACAGCATCTCTTTGAAGTTTATGTACAAGTTAATAAAGAAGCAGCAGATGATAAAAGTGTAGCAAAAGC
AGCACAGGAGTTCTTCCAACGATTGGAACTGGGCGATGTGCAAGCACTTTCACTGTGGCAAAAATTTCGG
GACTTGAGCATTGAAGAGTACATTCGGGTTTACAAGCGTCTGGGAGTATATTTTGATGAATATTCAGGAG
AATCATTTTATCGTGAAAAATCTCAAGAGGTCTTAAAGTTGCTGGAGAGTAAAGGACTCCTACTGAAAAC
AATAAAAGGAACGGCTGTAGTAGATCTCTCTGGGAATGGCGACCCCTCCTCAATTTGTACTGTAATGCGA
AGTGATGGGACTTCTCTCTATGCAACCAGAGATCTTGCAGCTGCTATAGATCGAATGGACAAGTATAATT
TTGATACAATGATATATGTGACAGATAAAGGACAAAAAAAGCATTTTCAGCAAGTATTCCAAATGCTGAA
GATCATGGGATATGACTGGGCAGAAAGGTGCCAGCACGTGCCCTTTGGAGTAGTACAGGGAATGAAGACT
CGAAGAGGAGATGTCACTTTCCTGGAAGATGTTTTAAATGAGATTCAATTAAGGATGCTACAGAACATGG
CTTCAATTAAGACAACTAAAGAACTCAAGAACCCACAAGAGACTGCAGAGAGGGTCGGGCTCGCAGCACT
CATTATTCAGGACTTCAAAGGTTTACTCTTATCTGACTACAAGTTCAGCTGGGATCGTGTTTTCCAGAGT
CGCGGGGACACAGGAGTCTTCCTACAGTACACACACGCCCGCCTCCACAGTTTGGAAGAGACTTTTGGAT
GTGGGTACCTGAATGACTTCAACACTGCTTGTTTACAAGAGCCACAGTCTGTTTCAATTCTTCAGCATCT
TCTCAGGTTCGACGAGGTGCTTTATAAATCATCTCAGGACTTTCAACCCAGGCATATCGTCAGTTACCTT
CTAACTTTAAGTCATCTTGCAGCTGTGGCACACAAAACACTACAAATAAAAGATAGTCCTCCTGAAGTGG
CTGGGGCCAGACTTCATCTTTTCAAAGCTGTCCGTTCTGTCCTAGCCAATGGAATGAAACTTCTTGGAAT
AACACCTGTATGTAGGATGTAA

Translation (403 aa):
MQFGLLGTGFQLFGYEEKLQSNPLQHLFEVYVQVNKEAADDKSVAKAAQEFFQRLELGDVQALSLWQKFR
DLSIEEYIRVYKRLGVYFDEYSGESFYREKSQEVLKLLESKGLLLKTIKGTAVVDLSGNGDPSSICTVMR
SDGTSLYATRDLAAAIDRMDKYNFDTMIYVTDKGQKKHFQQVFQMLKIMGYDWAERCQHVPFGVVQGMKT
RRGDVTFLEDVLNEIQLRMLQNMASIKTTKELKNPQETAERVGLAALIIQDFKGLLLSDYKFSWDRVFQS
RGDTGVFLQYTHARLHSLEETFGCGYLNDFNTACLQEPQSVSILQHLLRFDEVLYKSSQDFQPRHIVSYL
LTLSHLAAVAHKTLQIKDSPPEVAGARLHLFKAVRSVLANGMKLLGITPVCRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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