NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4934.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4934.2 Public Homo sapiens 6 TFAP2B 24 110 108 CCDS HistoryNCBI Gene:7021Re-query CCDS DB by CCDS ID:4934.2Re-query CCDS DB by GeneID:7021See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4934.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393655.4 ENSP00000377265.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393655.4Link to Ensembl Protein Viewer:ENSP00000377265.2Re-query CCDS DB by Nucleotide ID:ENST00000393655Re-query CCDS DB by Protein ID:ENSP00000377265
Original member Current member NCBI NM_003221.4 NP_003212.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003221.4Link to Protein Sequence:NP_003212.2Re-query CCDS DB by Nucleotide ID:NM_003221Re-query CCDS DB by Protein ID:NP_003212Link to BLAST:NP_003212.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003212.2 460 Q92481-1 460 100% 0 0

Chromosomal Locations for CCDS 4934.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50818892 50818972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50823407 50823865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50828619 50828679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50836061 50836280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50837975 50838093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50840156 50840297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50843092 50843392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGCACTCACCTCCTAGAGACCAGGCTGCCATCATGCTCTGGAAGCTTGTGGAGAATGTCAAGTACGAAG
AT
ATCTATGAGGACCGGCACGATGGTGTCCCGAGCCACAGCTCGCGGCTCTCCCAGCTGGGCTCGGTGTC
C
CAAGGACCCTACTCGAGCGCCCCGCCGCTGTCCCACACCCCGTCGTCGGACTTCCAGCCGCCCTACTTC
CCA
CCCCCCTACCAGCCGCTCCCCTACCACCAGAGCCAGGACCCCTACTCCCACGTCAACGACCCCTACT
CC
CTGAACCCACTGCACCAGCCCCAGCAACATCCCTGGGGGCAACGGCAGCGGCAAGAAGTGGGTTCGGA
A
GCCGGCTCTCTCCTGCCCCAGCCTCGGGCCGCCTTGCCCCAGCTCTCGGGCCTTGACCCCCGGAGGGAC
TAC
CACTCGGTCCGCCGGCCGGACGTGCTGCTGCATTCGGCGCACCACGGCCTGGACGCGGGCATGGGTG
AC
AGCCTCTCGCTGCACGGCCTCGGCCATCCCGGAATGGAAGACGTCCAGTCAGTTGAAGATGCCAATAA
C
AGCGGCATGAATCTATTGGACCAGTCTGTCATTAAAAAAGTTCCAGTTCCTCCCAAATCGGTGACTTCT
CTA
ATGATGAATAAAGACGGCTTCCTGGGAGGCATGTCTGTCAACACCGGCGAGGTGTTTTGCTCCGTCC
CA
GGCCGTTTGTCTCTGCTCAGTTCAACTTCGAAGTACAAAGTAACTGTGGGAGAAGTTCAGAGACGGCT
G
TCGCCCCCTGAATGCCTCAATGCATCTCTCCTCGGCGGAGTCCTCAGAAGAGCCAAATCGAAAAATGGG
GGG
AGATCTTTGCGAGAAAGGCTAGAAAAAATCGGTTTGAATTTACCCGCGGGCAGGCGCAAAGCAGCAA
AT
GTCACGTTACTCACCTCCCTGGTGGAAGGAGAAGCTGTTCACTTAGCTAGGGATTTTGGGTACATTTG
C
GAAACGGAGTTTCCCGCCAAAGCCGTCTCTGAGTATTTGAACCGGCAGCACACAGACCCGAGTGACCTG
CAC
TCCCGAAAGAATATGCTGTTGGCCACCAAGCAACTTTGTAAAGAATTTACGGATCTACTGGCGCAGG
AC
CGGACACCGATAGGGAACAGCCGACCCAGCCCCATCCTGGAGCCGGGGATCCAGAGCTGCCTCACGCA
C
TTCAGCCTCATCACGCACGGCTTCGGCGCCCCGGCCATTTGCGCCGCGCTCACGGCCCTGCAGAACTAT
CTC
ACCGAGGCGCTCAAAGGCATGGACAAGATGTTCTTGAACAACACCACCACTAACAGGCACACGTCTG
GG
GAAGGCCCAGGTAGTAAAACTGGCGACAAGGAGGAGAAACACAGGAAATGA


Translation (460 aa):
MHSPPRDQAAIMLWKLVENVKYEDIYEDRHDGVPSHSSRLSQLGSVSQGPYSSAPPLSHTPSSDFQPPYF
P
PPYQPLPYHQSQDPYSHVNDPYSLNPLHQPQQHPWGQRQRQEVGSEAGSLLPQPRAALPQLSGLDPRRD
Y
HSVRRPDVLLHSAHHGLDAGMGDSLSLHGLGHPGMEDVQ
SVEDANNSGMNLLDQSVIKKVPVPPKSVTS
L
MMNKDGFLGGMSVNTGEVFCSVPGRLSLLSSTSKYKVTVGEVQRRLSPPECLNASLLGGVLR
RAKSKNG
G
RSLRERLEKIGLNLPAGRRKAANVTLLTSLVE
GEAVHLARDFGYICETEFPAKAVSEYLNRQHTDPSDL
H
SRKNMLLAT
KQLCKEFTDLLAQDRTPIGNSRPSPILEPGIQSCLTHFSLITHGFGAPAICAALTALQNY
L
TEALKGMDKMFLNNTTTNRHTSGEGPGSKTGDKEEKHRK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser