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Report for CCDS4559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4559.1 Public Homo sapiens 6 C6orf62 24 110 108 CCDS HistoryNCBI Gene:81688Re-query CCDS DB by CCDS ID:4559.1Re-query CCDS DB by GeneID:81688See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378119.9 ENSP00000367359.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378119.9Link to Ensembl Protein Viewer:ENSP00000367359.4Re-query CCDS DB by Nucleotide ID:ENST00000378119Re-query CCDS DB by Protein ID:ENSP00000367359
Original member Current member NCBI NM_030939.5 NP_112201.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030939.5Link to Protein Sequence:NP_112201.1Re-query CCDS DB by Nucleotide ID:NM_030939Re-query CCDS DB by Protein ID:NP_112201Link to BLAST:NP_112201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112201.1 229 Q9GZU0-1 229 100% 0 0

Chromosomal Locations for CCDS 4559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24706137 24706262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24708777 24708911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24714318 24714440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24716148 24716324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24718540 24718668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGGGGACCCAAACTCCCGGAAGAAACAAGCTCTGAACAGACTACGTGCTCAGCTTAGAAAGAAAAAAG
AATCTCTAGCTGACCAGTTTGACTTCAAGATGTATATTGCCTTTGTATTCAAGGAGAAGAAGAAAAAGTC
AGCACTTTTTGAAGTGTCTGAGGTTATACCAGTCATGACAAATAATTATGAAGAAAATATCCTGAAAGGT
GTGCGAGATTCCAGCTATTCCTTGGAAAGTTCCCTAGAGCTTTTACAGAAGGATGTGGTACAGCTCCATG
CTCCTCGATATCAGTCTATGAGAAGGGATGTAATTGGCTGTACTCAGGAGATGGATTTCATTCTTTGGCC
TCGGAATGATATTGAAAAAATCGTCTGTCTCCTGTTTTCTAGGTGGAAAGAATCTGATGAGCCTTTTAGG
CCTGTTCAGGCCAAATTTGAGTTTCATCATGGTGACTATGAAAAACAGTTTCTGCATGTACTGAGCCGCA
AGGACAAGACTGGAATCGTTGTCAACAATCCTAACCAGTCAGTGTTTCTCTTCATTGACAGACAGCACTT
GCAGACTCCAAAAAACAAAGCTACAATCTTCAAGTTATGCAGCATCTGCCTCTACCTGCCACAGGAACAG
CTCACCCACTGGGCAGTTGGCACCATAGAGGATCACCTCCGTCCTTATATGCCAGAGTAG

Translation (229 aa):
MGDPNSRKKQALNRLRAQLRKKKESLADQFDFKMYIAFVFKEKKKKSALFEVSEVIPVMTNNYEENILKG
VRDSSYSLESSLELLQKDVVQLHAPRYQSMRRDVIGCTQEMDFILWPRNDIEKIVCLLFSRWKESDEPFR
PVQAKFEFHHGDYEKQFLHVLSRKDKTGIVVNNPNQSVFLFIDRQHLQTPKNKATIFKLCSICLYLPQEQ
LTHWAVGTIEDHLRPYMPE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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