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Report for CCDS4324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4324.1 Public Homo sapiens 5 MFAP3 24 110 108 CCDS HistoryNCBI Gene:4238Re-query CCDS DB by CCDS ID:4324.1Re-query CCDS DB by GeneID:4238See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4324.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322602.9 ENSP00000322956.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322602.9Link to Ensembl Protein Viewer:ENSP00000322956.5Re-query CCDS DB by Nucleotide ID:ENST00000322602Re-query CCDS DB by Protein ID:ENSP00000322956
Original member Current member EBI ENST00000522782.6 ENSP00000430852.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000522782.6Link to Ensembl Protein Viewer:ENSP00000430852.2Re-query CCDS DB by Nucleotide ID:ENST00000522782Re-query CCDS DB by Protein ID:ENSP00000430852
Original member Current member NCBI NM_001242336.2 NP_001229265.1 Accepted alive Link to Nucleotide Sequence:NM_001242336.2Link to Protein Sequence:NP_001229265.1Re-query CCDS DB by Nucleotide ID:NM_001242336Re-query CCDS DB by Protein ID:NP_001229265Link to BLAST:NP_001229265.1
Original member Current member NCBI NM_005927.5 NP_005918.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005927.5Link to Protein Sequence:NP_005918.1Re-query CCDS DB by Nucleotide ID:NM_005927Re-query CCDS DB by Protein ID:NP_005918Link to BLAST:NP_005918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229265.1 362 P55082-1 362 100% 0 0
NP_005918.1 362 P55082-1 362 100% 0 0

Chromosomal Locations for CCDS 4324.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 154049723 154050017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154052920 154053713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGAAGCTACATTGTTGCTTATTCACTTTAGTGGCAAGTATTATTGTGCCAGCTGCTTTTGTTTTGGAAG
ATGTGGACTTCGACCAAATGGTTTCACTGGAAGCAAATCGTAGTTCTTACAATGCATCCTTTCCCTCAAG
CTTTGAACTCTCAGCAAGTTCCCACTCGGATGATGATGTCATCATAGCCAAAGAGGGAACTAGCGTTTCA
ATTGAGTGTCTTCTCACAGCCAGTCACTATGAAGATGTCCATTGGCACAATTCAAAAGGACAGCAACTGG
ATGGCAGAAGCAGAGGTGGAAAGTGGTTGGTTTCTGATAACTTCCTAAACATCACCAATGTAGCTTTTGA
TGACCGTGGGCTCTATACCTGTTTCGTCACCTCTCCAATTCGTGCCTCCTACTCTGTCACCCTACGTGTT
ATCTTCACCTCGGGAGACATGAGTGTCTATTACATGATTGTTTGCCTGATTGCCTTTACAATCACACTCA
TCTTGAATGTCACACGGCTGTGCATGATGAGCAGCCATCTTCGCAAGACTGAGAAGGCTATCAATGAGTT
CTTTAGAACTGAAGGGGCTGAGAAACTTCAGAAGGCCTTTGAGATTGCAAAACGTATCCCCATCATTACC
TCAGCCAAAACTCTGGAGCTCGCCAAAGTCACACAATTTAAGACCATGGAGTTTGCTCGTTATATTGAAG
AACTGGCAAGAAGTGTCCCTCTTCCACCTCTTATTCTAAACTGTCGAGCCTTTGTTGAGGAGATGTTTGA
GGCTGTGCGAGTGGACGACCCTGATGACCTGGGTGAAAGAATTAAAGAGAGACCTGCCTTGAATGCTCAA
GGTGGCATCTATGTCATTAACCCAGAGATGGGACGGAGTAATTCACCAGGAGGAGATTCAGATGATGGCT
CTCTGAATGAACAAGGCCAGGAAATAGCAGTTCAGGTTTCTGTCCACCTTCAGTCAGAAACCAAAAGTAT
TGATACAGAGTCTCAAGGCAGCAGTCATTTCAGTCCACCTGATGATATAGGATCTGCAGAATCTAACTGT
AACTACAAAGATGGGGCATATGAAAACTGTCAGCTGTAA

Translation (362 aa):
MKLHCCLFTLVASIIVPAAFVLEDVDFDQMVSLEANRSSYNASFPSSFELSASSHSDDDVIIAKEGTSVS
IECLLTASHYEDVHWHNSKGQQLDGRSRGGKWLVSDNFLNITNVAFDDRGLYTCFVTSPIRASYSVTLRV
IFTSGDMSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIIT
SAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQ
GGIYVINPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNC
NYKDGAYENCQL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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