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Report for CCDS47299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47299.1 Public Homo sapiens 5 STK32A 24 110 108 CCDS HistoryNCBI Gene:202374Re-query CCDS DB by CCDS ID:47299.1Re-query CCDS DB by GeneID:202374See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397936.8 ENSP00000381030.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397936.8Link to Ensembl Protein Viewer:ENSP00000381030.3Re-query CCDS DB by Nucleotide ID:ENST00000397936Re-query CCDS DB by Protein ID:ENSP00000381030
Original member Current member NCBI NM_001112724.2 NP_001106195.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001112724.2Link to Protein Sequence:NP_001106195.1Re-query CCDS DB by Nucleotide ID:NM_001112724Re-query CCDS DB by Protein ID:NP_001106195Link to BLAST:NP_001106195.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106195.1 396 Q8WU08-1 396 100% 0 0

Chromosomal Locations for CCDS 47299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147239635 147239686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147278124 147278179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147279247 147279398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147323898 147324071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147343006 147343043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147351065 147351154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147361517 147361614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147370654 147370770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147373169 147373294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147375090 147375218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147383441 147383505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147383890 147383983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGGAGCGAACACTTCAAGAAAACCACCAGTGTTTGATGAAAATGAAGATGTCAACTTTGACCACTTTG
AAATTTTGCGAGCCATTGGGAAAGGCAGTTTTGGGAAGGTCTGCATTGTACAGAAGAATGATACCAAGAA
GATGTACGCAATGAAGTACATGAATAAACAAAAGTGCGTGGAGCGCAATGAAGTGAGAAATGTCTTCAAG
GAACTCCAGATCATGCAGGGTCTGGAGCACCCTTTCCTGGTTAATTTGTGGTATTCCTTCCAAGATGAGG
AAGACATGTTCATGGTGGTGGACCTCCTGCTGGGTGGAGACCTGCGTTATCACCTGCAACAGAACGTCCA
CTTCAAGGAAGAAACAGTGAAGCTCTTCATCTGTGAGCTGGTCATGGCCCTGGACTACCTGCAGAACCAG
CGCATCATTCACAGGGATATGAAGCCTGACAATATTTTACTTGACGAACATGGGCACGTGCACATCACAG
ATTTCAACATTGCTGCGATGCTGCCCAGGGAGACACAGATTACCACCATGGCTGGCACCAAGCCTTACAT
GGCACCTGAGATGTTCAGCTCCAGAAAAGGAGCAGGCTATTCCTTTGCTGTTGACTGGTGGTCCCTGGGA
GTGACGGCATATGAACTGCTGAGAGGCCGGAGACCGTATCATATTCGCTCCAGTACTTCCAGCAAGGAAA
TTGTACACACGTTTGAGACGACTGTTGTAACTTACCCTTCTGCCTGGTCACAGGAAATGGTGTCACTTCT
TAAAAAGCTACTCGAACCTAATCCAGACCAACGATTTTCTCAGTTATCTGATGTCCAGAACTTCCCGTAT
ATGAATGATATAAACTGGGATGCAGTTTTTCAGAAGAGGCTCATTCCAGGTTTCATTCCTAATAAAGGCA
GGCTGAATTGTGATCCTACCTTTGAACTTGAGGAAATGATTTTGGAGTCCAAACCTCTACATAAGAAAAA
AAAGCGTCTGGCAAAGAAGGAGAAGGATATGAGGAAATGCGATTCTTCTCAGACATGTCTTCTTCAAGAG
CACCTTGACTCTGTCCAGAAGGAGTTCATAATTTTCAACAGAGAAAAAGTAAACAGGGACTTTAACAAAA
GACAACCAAATCTAGCCTTGGAACAAACCAAAGACCCACAAGGTGAGGATGGTCAGAATAACAACTTGTA
A

Translation (396 aa):
MGANTSRKPPVFDENEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFK
ELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQ
RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLG
VTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPY
MNDINWDAVFQKRLIPGFIPNKGRLNCDPTFELEEMILESKPLHKKKKRLAKKEKDMRKCDSSQTCLLQE
HLDSVQKEFIIFNREKVNRDFNKRQPNLALEQTKDPQGEDGQNNNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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