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Report for CCDS54896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54896.1 Public Homo sapiens 5 C5orf63 24 110 108 CCDS HistoryNCBI Gene:401207Re-query CCDS DB by CCDS ID:54896.1Re-query CCDS DB by GeneID:401207See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54896.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296662.10 ENSP00000453964.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296662.10Link to Ensembl Protein Viewer:ENSP00000453964.1Re-query CCDS DB by Nucleotide ID:ENST00000296662Re-query CCDS DB by Protein ID:ENSP00000453964
Original member Current member NCBI NM_001164478.2 NP_001157950.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164478.2Link to Protein Sequence:NP_001157950.1Re-query CCDS DB by Nucleotide ID:NM_001164478Re-query CCDS DB by Protein ID:NP_001157950Link to BLAST:NP_001157950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157950.1 115 A6NC05-2 115 100% 0 0

Chromosomal Locations for CCDS 54896.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 127051771 127051947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127052613 127052669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127058882 127058995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGCTCTGGTTTCAAGGAAATAGCATGCAACTTGCCAGATCCTCCTTTGGACTCTTCTTGAGAAATTGCT
CTGCCTCTAAGACAACTCTGCCTGTGTTGACCTTATTCACAAAGGACCCATGCCCCCTTTGTGATGAAGC
CAAGGAAGTACTCAAGCCTTATGAAAACAGGTTCATTTTACAGGAGGTGAACATCACACTTCCAGAAAAC
TCTGTCTGGTATGAAAGGTATAAATTTGATATTCCTGTCTTTCACTTGAATGGCCAGTTTCTGATGATGC
ATCGAGTAAACACCTCAAAACTTGAAAAACAGCTCCTGAAACTTGAGCAGCAAAGTACTGGAGGCTGA

Translation (115 aa):
MLWFQGNSMQLARSSFGLFLRNCSASKTTLPVLTLFTKDPCPLCDEAKEVLKPYENRFILQEVNITLPEN
SVWYERYKFDIPVFHLNGQFLMMHRVNTSKLEKQLLKLEQQSTGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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