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Report for CCDS3987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3987.1 Public Homo sapiens 5 TRIM23 24 110 108 CCDS HistoryNCBI Gene:373Re-query CCDS DB by CCDS ID:3987.1Re-query CCDS DB by GeneID:373See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3987.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231524.14 ENSP00000231524.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231524.14Link to Ensembl Protein Viewer:ENSP00000231524.9Re-query CCDS DB by Nucleotide ID:ENST00000231524Re-query CCDS DB by Protein ID:ENSP00000231524
Original member Current member NCBI NM_001656.4 NP_001647.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001656.4Link to Protein Sequence:NP_001647.1Re-query CCDS DB by Nucleotide ID:NM_001656Re-query CCDS DB by Protein ID:NP_001647Link to BLAST:NP_001647.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001647.1 574 P36406-1 574 100% 0 0

Chromosomal Locations for CCDS 3987.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65591769 65591948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65594521 65594645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65596421 65596531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65597051 65597180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65604911 65605045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65609243 65609458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65610861 65611043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65611603 65611881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65614098 65614219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65618093 65618255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65624194 65624274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGCTACCCTGGTTGTAAACAAGCTCGGAGCGGGAGTAGACAGTGGCCGGCAGGGCAGCCGGGGGACAG
CTGTAGTGAAGGTGCTAGAGTGTGGAGTTTGTGAAGATGTCTTTTCTTTGCAAGGAGACAAAGTTCCCCG
TCTTTTGCTTTGTGGCCATACCGTCTGTCATGACTGTCTCACTCGCCTACCTCTTCATGGAAGAGCAATC
CGTTGCCCATTTGATCGACAAGTAACAGACCTAGGTGATTCAGGTGTCTGGGGATTGAAAAAAAATTTTG
CTTTATTGGAGCTTTTGGAACGACTGCAGAATGGGCCTATTGGTCAGTATGGAGCTGCAGAAGAATCCAT
TGGGATATCTGGAGAGAGCATCATTCGTTGTGATGAAGATGAAGCTCACCTTGCCTCTGTATATTGCACT
GTGTGTGCAACTCATTTGTGCTCTGAGTGTTCTCAAGTTACTCATTCTACAAAGACATTAGCAAAGCACA
GGCGAGTTCCTCTAGCTGATAAACCTCATGAGAAAACTATGTGCTCTCAGCACCAGGTGCATGCCATTGA
GTTTGTTTGCTTGGAAGAAGGTTGTCAAACTAGCCCACTCATGTGCTGTGTCTGCAAAGAATATGGAAAA
CACCAGGGTCACAAGCATTCAGTATTGGAACCAGAAGCTAATCAGATCCGAGCATCAATTTTAGATATGG
CTCACTGCATACGGACCTTCACAGAGGAAATCTCAGATTATTCCAGAAAATTAGTTGGAATTGTGCAGCA
CATTGAAGGAGGAGAACAAATCGTGGAAGATGGAATTGGAATGGCTCACACAGAACATGTACCAGGGACT
GCAGAGAATGCCCGGTCATGTATTCGAGCTTATTTTTATGATCTACATGAAACTCTGTGTCGTCAAGAAG
AAATGGCTCTAAGTGTTGTTGATGCTCATGTTCGTGAAAAATTGATTTGGCTCAGGCAGCAACAAGAAGA
TATGACTATTTTGTTGTCAGAGGTTTCTGCAGCCTGCCTCCACTGTGAAAAGACTTTGCAGCAGGATGAT
TGTAGAGTTGTCTTGGCAAAACAGGAAATTACAAGGTTACTGGAAACATTGCAGAAACAGCAGCAGCAGT
TTACAGAAGTTGCAGATCACATTCAGTTGGATGCCAGCATCCCTGTCACTTTTACAAAGGATAATCGAGT
TCACATTGGACCAAAAATGGAAATTCGGGTCGTTACGTTAGGATTGGATGGTGCTGGAAAAACTACTATC
TTGTTTAAGTTAAAACAGGATGAATTCATGCAGCCCATTCCAACAATTGGTTTTAACGTGGAAACTGTAG
AATATAAAAATCTAAAATTCACTATTTGGGATGTAGGTGGAAAACACAAATTAAGACCATTGTGGAAACA
TTATTACCTCAATACTCAAGCTGTTGTGTTTGTTGTAGATAGCAGTCATAGAGACAGAATTAGTGAAGCA
CACAGCGAACTTGCAAAGTTGTTAACGGAAAAAGAACTCCGAGATGCTCTGCTCCTGATTTTTGCTAACA
AACAGGATGTTGCTGGAGCACTGTCAGTAGAAGAAATCACTGAACTACTCAGTCTCCATAAATTATGCTG
TGGCCGTAGCTGGTATATTCAGGGCTGTGATGCTCGAAGTGGTATGGGACTGTATGAAGGGTTGGACTGG
CTCTCACGGCAACTTGTAGCTGCTGGAGTATTGGATGTTGCTTGA

Translation (574 aa):
MATLVVNKLGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGRAI
RCPFDRQVTDLGDSGVWGLKKNFALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCT
VCATHLCSECSQVTHSTKTLAKHRRVPLADKPHEKTMCSQHQVHAIEFVCLEEGCQTSPLMCCVCKEYGK
HQGHKHSVLEPEANQIRASILDMAHCIRTFTEEISDYSRKLVGIVQHIEGGEQIVEDGIGMAHTEHVPGT
AENARSCIRAYFYDLHETLCRQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHCEKTLQQDD
CRVVLAKQEITRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTI
LFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEA
HSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW
LSRQLVAAGVLDVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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