NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34038.1 Public Homo sapiens 4 BANK1 24 110 108 CCDS HistoryNCBI Gene:55024Re-query CCDS DB by CCDS ID:34038.1Re-query CCDS DB by GeneID:55024See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322953.9 ENSP00000320509.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322953.9Link to Ensembl Protein Viewer:ENSP00000320509.4Re-query CCDS DB by Nucleotide ID:ENST00000322953Re-query CCDS DB by Protein ID:ENSP00000320509
Original member Current member NCBI NM_017935.5 NP_060405.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017935.5Link to Protein Sequence:NP_060405.5Re-query CCDS DB by Nucleotide ID:NM_017935Re-query CCDS DB by Protein ID:NP_060405Link to BLAST:NP_060405.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060405.5 785 Q8NDB2-1 785 100% 0 0

Chromosomal Locations for CCDS 34038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101790881 101790950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101829808 101830206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101855035 101855189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101862526 101862664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101870505 101870644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101895305 101895410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101917993 101918189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102021514 102021592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102025201 102025509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102029960 102030265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102043839 102043907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102060211 102060389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102063075 102063138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102071275 102071304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102072345 102072400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102073684 102073743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGCTGCCAGCAGCGCCAGGCAAGGGGCTTGGGAGCCCGGACCCCGCCCCCTGCGGCCCAGCGCCCCCAG
GAAATACAAAAGATATAATAATGATATATGAAGAAGATGCTGAGGAATGGGCTCTGTACTTGACAGAAGT
ATTTTTACATGTTGTGAAAAGGGAAGCCATCCTGTTATATCGCTTGGAGAATTTCTCTTTTCGGCATTTG
GAGTTGCTGAACTTAACGTCTTACAAATGTAAACTTTTGATATTATCAAATAGCCTGCTTAGAGACCTAA
CTCCAAAGAAATGTCAGTTTCTGGAAAAGATACTTCATTCACCAAAAAGTGTAGTTACTTTGCTTTGTGG
AGTGAAGAGTTCAGATCAGCTCTATGAATTACTAAATATCTCTCAAAGCAGATGGGAGATCTCAACTGAA
CAGGAACCTGAAGACTACATCTCTGTAATCCAGAGTATCATATTCAAAGATTCTGAAGACTACTTTGAGG
TCAACATTCCAACAGACCTACGAGCAAAACATTCTGGGGAAATAAGTGAGAGAAAGGAAATTGAAGAACT
ATCAGAAGCTTCAAGAAACACCATACCACTAGCAGTGGTGCTTCCCACTGAAATTCCATGTGAGAATCCT
GGTGAAATATTCATAATTTTGAGAGATGAAGTAATTGGTGATACTGTAGAGGTTGAATTTACATCAAGTA
ATAAGCGCATTAGAACACGGCCAGCCCTTTGGAATAAGAAAGTCTGGTGCATGAAAGCTTTAGAGTTTCC
TGCTGGTTCAGTCCATGTCAATGTCTACTGTGATGGAATCGTTAAAGCTACAACCAAAATTAAGTACTAC
CCAACAGCAAAGGCAAAGGAATGCCTATTCAGAATGGCAGATTCAGGAGAGAGTTTGTGCCAGAATAGCA
TTGAAGAACTTGATGGTGTCCTTACATCCATATTCAAACATGAGATACCATATTATGAGTTCCAGTCTCT
TCAAACTGAAATTTGTTCTCAAAACAAATATACTCATTTCAAAGAACTTCCAACTCTTCTCCACTGTGCA
GCAAAATTTGGCTTAAAGAACCTGGCTATTCATTTGCTTCAATGTTCAGGAGCAACCTGGGCATCTAAGA
TGAAAAATATGGAGGGTTCAGACCCCGCACATATTGCTGAAAGGCATGGTCACAAAGAACTCAAGAAAAT
CTTCGAAGACTTTTCAATCCAAGAAATTGACATAAATAATGAGCAAGAAAATGATTATGAAGAGGATATT
GCCTCATTTTCCACATATATTCCTTCCACACAGAACCCAGCATTTCATCATGAAAGCAGGAAGACATACG
GGCAGAGTGCAGATGGAGCTGAGGCAAATGAAATGGAAGGGGAAGGAAAACAGAATGGATCAGGCATGGA
GACCAAACACAGCCCACTAGAGGTTGGCAGTGAGAGTTCTGAAGACCAGTATGATGACTTGTATGTGTTC
ATTCCTGGTGCTGATCCAGAAAATAATTCACAAGAGCCACTCATGAGCAGCAGACCTCCTCTCCCCCCGC
CGCGACCTGTAGCTAATGCCTTCCAACTGGAAAGACCTCACTTCACCTTACCAGGGACAATGGTGGAAGG
CCAAATGGAAAGAAGTCAAAACTGGGGTCATCCTGGTGTTAGACAAGAAACAGGAGATGAACCCAAAGGA
GAAAAAGAGAAGAAAGAAGAGGAAAAAGAGCAGGAGGAGGAAGAAGACCCATATACTTTTGCTGAGATTG
ATGACAGTGAATATGACATGATATTGGCCAATCTGAGTATAAAGAAAAAAACTGGGAGTCGGTCTTTCAT
TATAAATAGACCTCCTGCCCCCACACCCCGACCCACAAGTATACCTCCAAAAGAGGAAACTACACCTTAC
ATAGCTCAAGTGTTTCAACAAAAGACAGCCAGAAGACAATCTGATGATGACAAGTTCTGTGGTCTTCCTA
AGAAACAAGACAGAGCTCGGATAGAGAGTCCAGCCTTTTCTACTCTCAGGGGCTGTCTAACTGATGGTCA
GGAAGAACTCATCCTCCTGCAGGAGAAAGTAAAGAATGGGAAAATGTCTATGGATGAAGCTCTGGAGAAA
TTTAAACACTGGCAGATGGGAAAAAGTGGCCTGGAAATGATTCAGCAGGAGAAATTACGACAACTACGAG
ACTGCATTATTGGGAAAAGGCCAGAAGAAGAAAATGTCTATAATAAACTCACCATTGTGCACCATCCAGG
TGGTAAGGAAACTGCCCACAATGAAAATAAGTTTTATAATGTACACTTCAGCAATAAGCTTCCTGCTCGA
CCCCAAGTTGAAAAGGAATTTGGTTTCTGTTGCAAGAAAGATCATTAA

Translation (785 aa):
MLPAAPGKGLGSPDPAPCGPAPPGNTKDIIMIYEEDAEEWALYLTEVFLHVVKREAILLYRLENFSFRHL
ELLNLTSYKCKLLILSNSLLRDLTPKKCQFLEKILHSPKSVVTLLCGVKSSDQLYELLNISQSRWEISTE
QEPEDYISVIQSIIFKDSEDYFEVNIPTDLRAKHSGEISERKEIEELSEASRNTIPLAVVLPTEIPCENP
GEIFIILRDEVIGDTVEVEFTSSNKRIRTRPALWNKKVWCMKALEFPAGSVHVNVYCDGIVKATTKIKYY
PTAKAKECLFRMADSGESLCQNSIEELDGVLTSIFKHEIPYYEFQSLQTEICSQNKYTHFKELPTLLHCA
AKFGLKNLAIHLLQCSGATWASKMKNMEGSDPAHIAERHGHKELKKIFEDFSIQEIDINNEQENDYEEDI
ASFSTYIPSTQNPAFHHESRKTYGQSADGAEANEMEGEGKQNGSGMETKHSPLEVGSESSEDQYDDLYVF
IPGADPENNSQEPLMSSRPPLPPPRPVANAFQLERPHFTLPGTMVEGQMERSQNWGHPGVRQETGDEPKG
EKEKKEEEKEQEEEEDPYTFAEIDDSEYDMILANLSIKKKTGSRSFIINRPPAPTPRPTSIPPKEETTPY
IAQVFQQKTARRQSDDDKFCGLPKKQDRARIESPAFSTLRGCLTDGQEELILLQEKVKNGKMSMDEALEK
FKHWQMGKSGLEMIQQEKLRQLRDCIIGKRPEEENVYNKLTIVHHPGGKETAHNENKFYNVHFSNKLPAR
PQVEKEFGFCCKKDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH