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Report for CCDS54754.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54754.2 Public Homo sapiens 4 DTHD1 24 110 108 CCDS HistoryNCBI Gene:401124Re-query CCDS DB by CCDS ID:54754.2Re-query CCDS DB by GeneID:401124See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 54754.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 54754.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000639862.2 ENSP00000492542.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000639862.2Link to Ensembl Protein Viewer:ENSP00000492542.1Re-query CCDS DB by Nucleotide ID:ENST00000639862Re-query CCDS DB by Protein ID:ENSP00000492542
Original member Current member NCBI NM_001170700.3 NP_001164171.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001170700.3Link to Protein Sequence:NP_001164171.2Re-query CCDS DB by Nucleotide ID:NM_001170700Re-query CCDS DB by Protein ID:NP_001164171Link to BLAST:NP_001164171.2

Chromosomal Locations for CCDS 54754.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 36281759 36282029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 36283976 36284591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 36290373 36290703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 36293526 36293705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 36294795 36295039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 36306191 36306352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 36308204 36308493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 36316242 36316486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 36339112 36339169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 36343502 36343824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2721 nt):
ATGGATATGGAATACATGGGCTCAGGTAAACTGGGCCAAATATTGAAGCAGATTTGGAGACAAAACCAGA
TGCTAAAGCAGGCACTCTTGGGTGATGACCTTTGTGAGGGGGCTGGTGGGGCCACTTGGATGGCCACTGT
GGTCTTTCTGGGTCAGGAACTCAGCAGTGCCCTTCACCAGCTGCTGGAGCACACCTCAGGCACCCTGCGT
TCCACCTGCCAGCAGCTGCATGTGCTGCTTGACAAAGAGAATCAATGTGTCTCGAGAAAAGAAATCATTA
CTTTCATAGACTGCCTCATAAAAATAACTGAACATTTGGGGAGCACTGCTGCACTTCTAAAGAAAGAAGA
AAAGGAGATTTGTAATTTATGCGGCATGCATGATGAATGTACTCCACAGCAGACAATGTCCTCCATTCAA
GATACCAAAGCAGCAGACATTGCTGCAAGAGGGGAACTAAATGTCATAGAAACAGCTACTGTTTCTCCCA
CAAATGGAGAGGAAAGTCATTACACAAACCAGGTCCAGTTAGAAAAAAATAAAACACATATGAGTTCAGC
ATTAGTGGAAAAAGAAAACAATACATCACTGAATGGACGTGTACTGGGGCAAGAAGAGTCACAGAATAAA
ATGTTCCCAGATAATGCAGAAAATGAAGATGATAAACAAATAGAACACATGACTGTTGAGAACATAAATG
GCAACAGGGAAGAGACTCATGGCATAATTCAGACAACAGAGACAGAAATTCAAGAGACTTCAGAAAGCCC
AAGAGAAGAGATGACCACATCCTCAATAATATGTGATATCTCCAAGAAATATATAAATAGTACTCTTCCC
AATGATTCAGAGAATATAAAGCACAAGAATAACATAATGGAAAAGGAGTATCTTGATGTGCTGAGTGATG
TTACTGGCCCCCAAGTGTCTTGTTATATTACAGCACCATCATATGTTCTACAACAACTAGAATGCCGGAT
AATAAATCACATGAGTTCTTTAATAGTGGGTGATAATGAAGAGTTAGTTAGCAACGTCATAACTATTGAA
TGCTCAGATAAGGAAAAGAGAGTTCCATTTCCAATAGGCATTGCAATTCCATTTACTGCACGTTACAGAG
GAAATTACAGAGATATCATGGTGAAAGTGTGTGACATAAACCTTCAATCAAGTTACCTAAACCCAAATTC
ACTAGAAGGAATGAAGGGAGGTTATAAGGGGACCTGTGCTTCAGTAAAAGTTTACAAATTGGGTATCTTT
TCTGTTGTGTCTTGTTTAAAGAAAGAGTCGTTCACAGTAACAAAGAAAGGCCTCGCTCTTAAGTCAAGCA
TGGATTCCCGAATATCCTTAAATTACCCTCCAGGAGTTTTTACCTCTCCAGTGCTGGTGCAGTTAAAGAT
CCAACCAGTTGACCCAGCTCTGGTGGCACATTTAAAAGCACAGCAAGATACTTTCTACTCAGTCCAATCC
ACAAGCCCTCTGATTCACATTCAGCACCCATCAACTTATCCTTTTCAGAAGCCAGTCACTTTGTTTTTAC
CTTGTTCTCCATACCTTGATAAAAACAACCTTGGTTCTGAGATAGATCATAAAAGAAGAGCAAGTGCCAC
AATAAATAGGATTACACCTTCGTATTTCAACCGGACAAAAATTGCCTCCATAAGAAAACCTAGGAAAAAT
GCCAGTGAATGTTTGAAATTACTGGGATTCAGAAGCCAAGACAGTGGTTGGTGTGGGCTTGATGATGTTG
TGAAAACCATACAGAGCGGCTTGGTATCAGTTGAATTGTATGAACATTTGGAGAGGTTTATTGTACTTCA
CCTCTCTTCCACCATGGACAATAGTCATTTGGTTACTTTTGTGAAATCTTTAGAGGAAGCCATGCTCAGC
ACCACTGCCTGCATAGTACTGTCTCACCAGAAGGACAATCCACATAGAATAGCTGTTTTAGTGGTGCCTT
CCAAAGATTTAAGCCAGGTGCTTAAGGACCTGCACTTGGAAGGGTTTGGAGGACCTCCAGAGCCATCTCG
TCATTTCCAAGTTCGAGAAGGAGAACAACTTCTTTTAAGATTTACTGGAAACATATTTGCTTCAAGCAAC
GGGAAGGATTATGGAAAAGACTACACACTTATTTTTCACTTGCAAAGAAAACCTAGGCTGGAACTCCAAA
TCAAAGAAGTGGACGAATTTGGAAACTATAGTTGCCCTCATTACAAAGGCACCATTGTCGTTTATAAAGT
ACCTAAAGGAAAGATAGTCCCCAACTTGAATCAATCTCTCGTAATTAATGAAAACCATTCTCAGTTGCCA
ATTTGCAAATTACCATTGAAATTGCCAAAGCATAAGAAATTAATCAACCGTCCACAGAGTACCAAAAGAG
TTTCTAAGGATCCTGTAGAAGCCCTTTGGGATAACTTGCTCCATTGGCTGGCTGAGGAGCTCTCAGAAGA
AAATGCTGAGTCTCTTTCCTCAACTCTCCCTCTGCGCCGTAGCACCATTCAGCTCATCAAACTCAAGAAC
CCTGATGATCTCACAGAACAGATCCACGAGTTTCTTTGCTTCTGGAAAAAATCGCTTCCAACTTTCACCG
ACAAACTTCGCCTCCTGGCTCGACATCTCCGCAAGATTGGCAGGAGTGATCTTGCAGAAGAGCTCAAATT
CAAGTGGGAAAATAAAGTGTTCACTGAACCACAGCAGTGTTTTGATGTAGCCCCTGAGTAA

Translation (906 aa):
MDMEYMGSGKLGQILKQIWRQNQMLKQALLGDDLCEGAGGATWMATVVFLGQELSSALHQLLEHTSGTLR
STCQQLHVLLDKENQCVSRKEIITFIDCLIKITEHLGSTAALLKKEEKEICNLCGMHDECTPQQTMSSIQ
DTKAADIAARGELNVIETATVSPTNGEESHYTNQVQLEKNKTHMSSALVEKENNTSLNGRVLGQEESQNK
MFPDNAENEDDKQIEHMTVENINGNREETHGIIQTTETEIQETSESPREEMTTSSIICDISKKYINSTLP
NDSENIKHKNNIMEKEYLDVLSDVTGPQVSCYITAPSYVLQQLECRIINHMSSLIVGDNEELVSNVITIE
CSDKEKRVPFPIGIAIPFTARYRGNYRDIMVKVCDINLQSSYLNPNSLEGMKGGYKGTCASVKVYKLGIF
SVVSCLKKESFTVTKKGLALKSSMDSRISLNYPPGVFTSPVLVQLKIQPVDPALVAHLKAQQDTFYSVQS
TSPLIHIQHPSTYPFQKPVTLFLPCSPYLDKNNLGSEIDHKRRASATINRITPSYFNRTKIASIRKPRKN
ASECLKLLGFRSQDSGWCGLDDVVKTIQSGLVSVELYEHLERFIVLHLSSTMDNSHLVTFVKSLEEAMLS
TTACIVLSHQKDNPHRIAVLVVPSKDLSQVLKDLHLEGFGGPPEPSRHFQVREGEQLLLRFTGNIFASSN
GKDYGKDYTLIFHLQRKPRLELQIKEVDEFGNYSCPHYKGTIVVYKVPKGKIVPNLNQSLVINENHSQLP
ICKLPLKLPKHKKLINRPQSTKRVSKDPVEALWDNLLHWLAEELSEENAESLSSTLPLRRSTIQLIKLKN
PDDLTEQIHEFLCFWKKSLPTFTDKLRLLARHLRKIGRSDLAEELKFKWENKVFTEPQQCFDVAPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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