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Report for CCDS58896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58896.1 Public Homo sapiens 4 PACRGL 24 110 108 CCDS HistoryNCBI Gene:133015Re-query CCDS DB by CCDS ID:58896.1Re-query CCDS DB by GeneID:133015See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58896.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502374.5 ENSP00000425461.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502374.5Link to Ensembl Protein Viewer:ENSP00000425461.1Re-query CCDS DB by Nucleotide ID:ENST00000502374Re-query CCDS DB by Protein ID:ENSP00000425461
Original member Current member NCBI NM_001258346.3 NP_001245275.1 Accepted alive Link to Nucleotide Sequence:NM_001258346.3Link to Protein Sequence:NP_001245275.1Re-query CCDS DB by Nucleotide ID:NM_001258346Re-query CCDS DB by Protein ID:NP_001245275Link to BLAST:NP_001245275.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245275.1 200 Q8N7B6-4 200 100% 0 0

Chromosomal Locations for CCDS 58896.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 20704482 20704533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20704660 20704814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20712788 20712922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20713432 20713539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20716107 20716248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20727285 20727295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGCAGAAATCAGAGGGCTCTGGAGGTACACAGTTGAAAAACAGAGCAACAGGTAACTATGATCAAAGGA
CATCATCAAGCACACAGTTAAAACACAGGAATGCAGTTCAGGGAAGCAAATCCTCATTGTCAACCAGTTC
TCCAGAGTCTGCAAGAAAACTTCATCCTAGACCAAGTGATAAACTGAACCCTAAAACAATTAATCCGGGT
CTGAGAGAGACTAAGCATCCATACACTTTTGTGTCAAAGGAGGGTTTTAGAGAATTACTTTTGGTCAAAG
GTGCTCCTGAAAAAGCTATTCCTTTGCTACCTAGACTGATTCCTGTGCTAAAGGCAGCTCTGGTCCATTC
GGATGATGAAGTGTTTGAAAGAGGATTGAATGCTCTAGTTCAGCTAAGTGTCGTTGTTGGTCCTTCTCTA
AACGACCATCTGAAGCATCTGCTTACAAGCGACCCTGTGCAGCTCATGAGGTTCCCAAGACCACTCTTAG
GTTTGATGATTTGCCAGAAGGATCCATGGAACTCAGGAAAGCTGTTACTGGCTGTTATGGTTTCTTACAA
CACACAAAAAATAAAGATTAAAATCAGCAAAGGGGAGCCTTAG

Translation (200 aa):
MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLNPKTINPG
LRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQLSVVVGPSL
NDHLKHLLTSDPVQLMRFPRPLLGLMICQKDPWNSGKLLLAVMVSYNTQKIKIKISKGEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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