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Report for CCDS54714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54714.1 Public Homo sapiens 4 TNIP2 24 110 108 CCDS HistoryNCBI Gene:79155Re-query CCDS DB by CCDS ID:54714.1Re-query CCDS DB by GeneID:79155See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54714.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510267.5 ENSP00000427613.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510267.5Link to Ensembl Protein Viewer:ENSP00000427613.1Re-query CCDS DB by Nucleotide ID:ENST00000510267Re-query CCDS DB by Protein ID:ENSP00000427613
Original member Current member NCBI NM_001161527.2 NP_001154999.1 Accepted alive Link to Nucleotide Sequence:NM_001161527.2Link to Protein Sequence:NP_001154999.1Re-query CCDS DB by Nucleotide ID:NM_001161527Re-query CCDS DB by Protein ID:NP_001154999Link to BLAST:NP_001154999.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154999.1 322 Q8NFZ5-2 322 100% 0 0

Chromosomal Locations for CCDS 54714.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2742257 2742520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2744387 2744506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2744697 2744945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2745446 2745535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2747655 2747900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGCAGCAGCTGCTGAGCCAGCCCCAACACGAGCGAGAGAAGGAAGTCGTCCTGCTACGGAGGAGCATGG
CAGAAGGGGAGCGCGCCCGGGCCGCCAGTGACGTCCTGTGCCGCTCCTTGGCCAACGAGACCCATCAGCT
GCGGAGGACGCTGACCGCCACCGCCCACATGTGTCAGCATCTGGCCAAGTGTCTGGATGAACGACAGCAT
GCACAAAGGAATGTGGGGGAGAGAAGTCCTGACCAGTCGGAACACACAGATGGGCACACCTCTGTCCAGA
GTGTTATTGAGAAGTTGCAGGAAGAAAATCGACTGTTAAAACAGAAGGTGACTCACGTTGAAGACCTCAA
TGCCAAGTGGCAGCGCTACAACGCCAGCAGGGACGAATACGTGAGGGGGCTCCATGCGCAGCTCAGGGGG
CTGCAGATCCCCCACGAGCCCGAGCTGATGAGGAAGGAGATCTCCCGGCTCAACAGACAGTTGGAAGAGA
AAATAAATGACTGTGCCGAAGTGAAGCAGGAGCTGGCGGCCTCCAGGACGGCCCGGGATGCTGCGTTGGA
GCGGGTGCAGATGCTGGAACAGCAGATTCTCGCTTACAAGGATGACTTCATGTCAGAAAGGGCCGATCGG
GAACGGGCTCAAAGTAGGATTCAAGAACTGGAGGAAAAGGTCGCCTCTTTGCTGCACCAGGTGTCCTGGA
GACAGGATTCTCGAGAGCCAGACGCCGGCCGGATTCACGCTGGGAGCAAAACTGCCAAGTATTTGGCCGC
CGACGCATTAGAGCTTATGGTGCCTGGTGGCTGGAGGCCTGGGACTGGGTCCCAGCAGCCAGAACCCCCT
GCAGAGGGCGGGCATCCTGGCGCGGCCCAGAGAGGCCAGGGGGACCTTCAGTGCCCTCACTGCCTGCAGT
GCTTCAGTGACGAGCAAGGGGAAGAGCTCCTCAGGCATGTGGCTGAGTGCTGCCAGTGA

Translation (322 aa):
MQQLLSQPQHEREKEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQH
AQRNVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRGLHAQLRG
LQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLEQQILAYKDDFMSERADR
ERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAKYLAADALELMVPGGWRPGTGSQQPEPP
AEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEELLRHVAECCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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