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Report for CCDS33933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33933.1 Public Homo sapiens 4 SLC26A1 24 110 108 CCDS HistoryNCBI Gene:10861Re-query CCDS DB by CCDS ID:33933.1Re-query CCDS DB by GeneID:10861See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33933.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398520.6 ENSP00000381532.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398520.6Link to Ensembl Protein Viewer:ENSP00000381532.2Re-query CCDS DB by Nucleotide ID:ENST00000398520Re-query CCDS DB by Protein ID:ENSP00000381532
Original member Current member EBI ENST00000622731.4 ENSP00000483506.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622731.4Link to Ensembl Protein Viewer:ENSP00000483506.1Re-query CCDS DB by Nucleotide ID:ENST00000622731Re-query CCDS DB by Protein ID:ENSP00000483506
Original member Current member NCBI NM_134425.4 NP_602297.1 Accepted alive Link to Nucleotide Sequence:NM_134425.4Link to Protein Sequence:NP_602297.1Re-query CCDS DB by Nucleotide ID:NM_134425Re-query CCDS DB by Protein ID:NP_602297Link to BLAST:NP_602297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_602297.1 224 Q9H2B4-2 224 100% 0 0

Chromosomal Locations for CCDS 33933.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 979406 979504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 991128 991703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGACGAGTCCCCTGAGCCTCTGCAGCAGGGCAGAGGGCCGGTGCCGGTCCGACGGCAGCGCCCAGCAC
CCCGGGGTCTGCGTGAGATGCTGAAGGCCAGGCTGTGGTGCAGCTGCTCGTGCAGTGTGCTGTGCGTCCG
GGCGCTGGTGCAGGACCTGCTCCCCGCCACGCGCTGGCTGCGTCAGTACCGCCCGCGGGAGTACCTGGCA
GGCGACGTCATGTCTGGGCTGGTCATCGGCATCATCCTGGTGCCGCAGGCCATCGCCTACTCATTGCTGG
CCGGGCTGCAGCCCATCTACAGCCTCTATACGTCCTTCTTCGCCAACCTCATCTACTTCCTCATGGGCAC
CTCACGGCATGTCTCCGTGGGCATCTTCAGCCTGCTTTGCCTCATGGTGGGGCAGGTGGTGGACCGGGAG
CTCCAGCTGGCCGGCTTTGACCCCTCCCAGGACGGCCTGCAGCCCGGAGCCAACAGCAGCACCCTCAACG
GCTCGGCTGCCATGCTGGACTGCGGGCGTGACTGCTACGCCATCCGTGTCGCCACCGCCCTCACGCTGAT
GACCGGGCTTTACCAGACGTCCTGGGGTAGAAACAGCTTCCAGCAACACCCATGGCAATTAACACAGAGG
AGTGACTCGCAGGAACTTCTGGAAGAGGAGGAAAGATCTTGCTGA

Translation (224 aa):
MDESPEPLQQGRGPVPVRRQRPAPRGLREMLKARLWCSCSCSVLCVRALVQDLLPATRWLRQYRPREYLA
GDVMSGLVIGIILVPQAIAYSLLAGLQPIYSLYTSFFANLIYFLMGTSRHVSVGIFSLLCLMVGQVVDRE
LQLAGFDPSQDGLQPGANSSTLNGSAAMLDCGRDCYAIRVATALTLMTGLYQTSWGRNSFQQHPWQLTQR
SDSQELLEEEERSC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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