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Report for CCDS33469.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
33469.2 |
Public |
Homo sapiens |
20 |
LPIN3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:64900](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:33469.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:64900](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 20 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 33469.1 |
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript and protein data. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 33469.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000632009.1 |
ENSP00000487971.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000632009.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000487971.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000632009](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000487971](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001301860.2 |
NP_001288789.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001301860.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001288789.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001301860](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001288789](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001288789.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001288789.1 |
852 |
Q9BQK8-2 |
852 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 33469.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2559 nt): ATGAACTACGTGGGGCAGCTGGCGGAGACGGTGTTTGGGACGGTGAAGGAGCTGTACCGGGGCCTGAACC CAGCCACACTGAGCGGCGGCATTGACGTGCTGGTGGTGAAGCAGGTGGACGGCTCGTTCCGGTGCTCACC CTTCCACGTGCGTTTTGGCAAGCTGGGCGTCCTGCGGTCGCGGGAGAAGGTGGTAGACATTGAGCTCAAT GGGGAGCCTGTGGACTTGCACATGAAGCTTGGGGACAGCGGGGAGGCCTTCTTTGTTCAGGAGCTGGAGA GCGATGATGAACATGTGCCTCCCGGCCTGTGCACCTCACCCATCCCTTGGGGGGGTCTGTCTGGCTTCCC CTCGGACTCCCAGCTGGGCACTGCCAGTGAGCCTGAGGGCCTCGTCATGGCAGGCACGGCCTCCACTGGG CGGAGGAAGAGGCGTCGCAGGAGGAAACCCAAGCAGAAAGAGGATGCAGTGGCAACTGATTCTAGTCCAG AGGAACTGGAGGCAGGCGCTGAGAGTGAGCTATCCCTGCCGGAAAAGCTGAGGCCAGAGCCCCCAGGCAG TGTCCAGTTGGAAGAGAAGTCTTCACTGCAGCCCAAAGACATCTACCCCTACTCGGATGGCGAGTGGCCC CCCCAGGCCAGCCTCTCAGCAGGTGAGCTAACATCCCCTAAGAGCGACTCGGAGCTGGAGGTGCGGACCC CGGAGCCCAGTCCCCTAAGAGCCGAGTCCCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGTGGCCAG AGCTGAGCGGCCCGAGTCCTCAGTGGTCCTTGAAGGCAGAGCTGGGGCAACCTCTCCTCCTCGGGGAGGA CCCAGCACTCCCTCTACCTCTGTGGCTGGCGGCGTGGACCCTTTGGGACTCCCAATCCAGCAAACAGAGG CTGGTGCCGACCTTCAGCCTGACACAGAGGATCCCACTCTAGTGGGTCCCCCTCTCCACACCCCAGAGAC AGAGGAAAGCAAGACTCAGAGCTCTGGGGACATGGGCCTCCCTCCTGCCTCCAAGTCATGGAGCTGGGCC ACTCTGGAGGTTCCAGTTCCCACCGGGCAGCCAGAGAGGGTCTCCAGGGGGAAAGGCTCCCCAAAGAGAA GCCAGCACCTGGGCCCCAGTGACATCTACCTGGATGACTTGCCCTCCCTGGACTCTGAGAATGCAGCGCT TTACTTCCCCCAAAGTGACTCTGGGCTGGGGGCCAGAAGATGGAGTGAACCCAGCAGTCAGAAGTCCCTG AGGGACCCCAACCCTGAACATGAACCTGAACCCACTCTGGACACAGTGGATACAATAGCACTGTCCCTCT GTGGTGGACTGGCTGACAGCCGGGACATCTCCCTAGAGAAATTCAACCAGCACAGCGTCTCTTACCAGGA CCTCACCAAAAACCCCGGACTTTTGGATGACCCAAACCTAGTGGTGAAAATCAATGGAAAGCATTATAAC TGGGCTGTGGCTGCCCCCATGATCCTCTCCCTGCAAGCCTTCCAGAAAAACTTGCCCAAGAGCACCATGG ACAAGCTGGAGAGGGAGAAGATGCCCCGGAAGGGTGGGCGATGGTGGTTTTCCTGGCGACGCAGGGACTT CCTGGCCGAGGAGCGCAGTGCCCAGAAGGAGAAGACTGCAGCCAAGGAGCAGCAGGGGGAGAAGACAGAA GTCCTGAGCAGTGATGACGATGCCCCAGACAGCCCTGTGATCCTGGAGATCCCCTCCTTGCCACCCTCCA CTCCACCCTCCACTCCTACCTACAAGAAGTCCCTCCGCCTCTCCTCCGATCAGATCCGGCGCCTGAACCT GCAAGAAGGTGCCAATGATGTGGTCTTCAGCGTGACCACTCAGTACCAGGGCACCTGCCGCTGCAAGGCC ACCATCTACCTGTGGAAATGGGACGACAAGGTGGTCATCTCTGACATCGACGGCACCATCACCAAGTCAG ATGCTCTGGGCCATATCCTGCCCCAGCTGGGGAAAGACTGGACACACCAGGGCATCACCAGTCTCTATCA CAAAATCCAACTAAATGGGTACAAGTTCCTGTACTGCTCGGCGCGGGCCATTGGCATGGCGGACCTCACC AAGGGGTACCTGCAGTGGGTGAGCGAGGGGGGCTGTAGCCTCCCCAAGGGCCCCATCCTTCTGTCTCCCA GCAGCCTCTTCTCTGCCCTCCACAGAGAGGTGATCGAGAAGAAACCAGAGGTGTTCAAGGTCGCCTGCCT GAGTGACATCCAGCAGCTGTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGAATAGGCCCAAT GATGTCTTTGCCTACCGGCAGGTGGGCCTGCCTGAGTCACGCATCTTCACAGTCAACCCCCGGGGAGAGC TCATCCAGGAGCTCATAAAGAACCACAAATCCACGTATGAGCGGCTTGGTGAAGTGGTCGAGCTCCTCTT CCCACCTGTGGCCCGTGGCCCCAGCACAGACCTGGCCAACCCTGAATACAGTAACTTCTGCTACTGGCGG GAGCCACTGCCTGCTGTGGACCTTGATACCCTGGACTGA
Translation (852 aa): MNYVGQLAETVFGTVKELYRGLNPATLSGGIDVLVVKQVDGSFRCSPFHVRFGKLGVLRSREKVVDIELN GEPVDLHMKLGDSGEAFFVQELESDDEHVPPGLCTSPIPWGGLSGFPSDSQLGTASEPEGLVMAGTASTG RRKRRRRRKPKQKEDAVATDSSPEELEAGAESELSLPEKLRPEPPGSVQLEEKSSLQPKDIYPYSDGEWP PQASLSAGELTSPKSDSELEVRTPEPSPLRAESHMQWAWGRLPKVARAERPESSVVLEGRAGATSPPRGG PSTPSTSVAGGVDPLGLPIQQTEAGADLQPDTEDPTLVGPPLHTPETEESKTQSSGDMGLPPASKSWSWA TLEVPVPTGQPERVSRGKGSPKRSQHLGPSDIYLDDLPSLDSENAALYFPQSDSGLGARRWSEPSSQKSL RDPNPEHEPEPTLDTVDTIALSLCGGLADSRDISLEKFNQHSVSYQDLTKNPGLLDDPNLVVKINGKHYN WAVAAPMILSLQAFQKNLPKSTMDKLEREKMPRKGGRWWFSWRRRDFLAEERSAQKEKTAAKEQQGEKTE VLSSDDDAPDSPVILEIPSLPPSTPPSTPTYKKSLRLSSDQIRRLNLQEGANDVVFSVTTQYQGTCRCKA TIYLWKWDDKVVISDIDGTITKSDALGHILPQLGKDWTHQGITSLYHKIQLNGYKFLYCSARAIGMADLT KGYLQWVSEGGCSLPKGPILLSPSSLFSALHREVIEKKPEVFKVACLSDIQQLFLPHGQPFYAAFGNRPN DVFAYRQVGLPESRIFTVNPRGELIQELIKNHKSTYERLGEVVELLFPPVARGPSTDLANPEYSNFCYWR EPLPAVDLDTLD
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