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Report for CCDS13197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13197.1 Public Homo sapiens 20 PLAGL2 24 110 108 CCDS HistoryNCBI Gene:5326Re-query CCDS DB by CCDS ID:13197.1Re-query CCDS DB by GeneID:5326See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13197.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246229.5 ENSP00000246229.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246229.5Link to Ensembl Protein Viewer:ENSP00000246229.4Re-query CCDS DB by Nucleotide ID:ENST00000246229Re-query CCDS DB by Protein ID:ENSP00000246229
Original member Current member NCBI NM_002657.3 NP_002648.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002657.3Link to Protein Sequence:NP_002648.1Re-query CCDS DB by Nucleotide ID:NM_002657Re-query CCDS DB by Protein ID:NP_002648Link to BLAST:NP_002648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002648.1 496 Q9UPG8 496 100% 0 0

Chromosomal Locations for CCDS 13197.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 32196452 32197682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32201919 32202178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGACCACATTTTTCACCAGCGTCCCCCCCTGGATTCAAGATGCAAAGCAGGAGGAGGAAGTGGGCTGGA
AACTAGTTCCCAGGCCTCGGGGCCGGGAGGCGGAGAGTCAAGTGAAGTGCCAATGTGAAATTTCGGGAAC
ACCTTTCTCAAATGGGGAGAAGCTGAGGCCTCACAGCCTCCCGCAACCAGAGCAGAGACCATATAGCTGC
CCTCAGCTGCACTGTGGCAAGGCTTTTGCTTCCAAATACAAGCTGTATAGGCACATGGCCACCCACTCAG
CCCAGAAACCCCACCAGTGTATGTACTGTGATAAGATGTTTCACCGCAAGGACCATCTGCGGAACCATCT
GCAGACCCATGATCCTAACAAAGAGGCCCTCCACTGCTCTGAGTGCGGTAAGAATTACAATACGAAGCTG
GGCTACCGGCGCCACCTGGCCATGCATGCTGCCAGCAGCGGTGACCTCAGCTGCAAGGTGTGCCTGCAGA
CCTTTGAGAGTACCCAGGCCCTGCTAGAGCACCTGAAGGCCCACTCACGCCGGGTAGCAGGCGGTGCCAA
GGAGAAGAAGCACCCCTGTGACCACTGCGACCGGCGGTTCTATACTCGTAAGGATGTACGGCGGCACCTA
GTGGTGCACACAGGCCGTAAGGACTTCCTGTGCCAGTACTGTGCCCAGCGGTTTGGCCGTAAGGACCACC
TGACGCGTCATGTCAAGAAGAGCCACTCGCAGGAGCTGCTCAAGATCAAGACAGAGCCCGTGGACATGTT
AGGCCTACTCAGCTGCAGCTCCACAGTCAGTGTGAAGGAAGAGCTGAGCCCTGTGCTGTGCATGGCCTCT
CGGGACGTAATGGGGACCAAGGCCTTCCCTGGCATGTTGCCCATGGGCATGTATGGTGCCCACATCCCTA
CCATGCCCAGCACGGGCGTGCCACACTCCCTGGTGCACAACACGCTGCCCATGGGTATGAGCTACCCTCT
GGAATCCTCACCTATCTCTTCCCCAGCTCAGCTCCCTCCAAAATACCAGCTTGGATCTACCTCATACTTG
CCCGACAAATTGCCCAAAGTGGAGGTGGATAGTTTTCTGGCGGAGCTTCCTGGAAGCCTGTCTCTCTCAT
CCGCTGAACCCCAGCCCGCCTCACCTCAGCCGGCGGCAGCTGCGGCCCTCCTAGATGAAGCACTGCTTGC
CAAGAGCCCCGCCAACCTCTCTGAGGCCCTCTGCGCTGCTAATGTGGACTTCTCCCACCTACTGGGCTTT
CTTCCACTCAACCTGCCCCCGTGTAACCCACCTGGGGCCACAGGAGGCCTGGTCATGGGCTACTCCCAGG
CTGAGGCACAGCCCCTGCTTACCACTTTGCAAGCTCAGCCTCAAGATTCCCCAGGAGCTGGGGGACCACT
GAACTTTGGGCCTCTGCACTCCTTGCCTCCTGTCTTCACGTCTGGCCTGAGTAGCACCACCCTGCCTCGT
TTCCATCAAGCATTCCAGTAG

Translation (496 aa):
MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSLPQPEQRPYSC
PQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTHDPNKEALHCSECGKNYNTKL
GYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSRRVAGGAKEKKHPCDHCDRRFYTRKDVRRHL
VVHTGRKDFLCQYCAQRFGRKDHLTRHVKKSHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMAS
RDVMGTKAFPGMLPMGMYGAHIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSYL
PDKLPKVEVDSFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGPLHSLPPVFTSGLSSTTLPR
FHQAFQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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