NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2305.1 Public Homo sapiens 2 INPP1 24 110 108 CCDS HistoryNCBI Gene:3628Re-query CCDS DB by CCDS ID:2305.1Re-query CCDS DB by GeneID:3628See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322522.8 ENSP00000325423.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322522.8Link to Ensembl Protein Viewer:ENSP00000325423.4Re-query CCDS DB by Nucleotide ID:ENST00000322522Re-query CCDS DB by Protein ID:ENSP00000325423
Original member Current member EBI ENST00000392329.7 ENSP00000376142.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392329.7Link to Ensembl Protein Viewer:ENSP00000376142.2Re-query CCDS DB by Nucleotide ID:ENST00000392329Re-query CCDS DB by Protein ID:ENSP00000376142
Original member Current member NCBI NM_001128928.2 NP_001122400.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128928.2Link to Protein Sequence:NP_001122400.1Re-query CCDS DB by Nucleotide ID:NM_001128928Re-query CCDS DB by Protein ID:NP_001122400Link to BLAST:NP_001122400.1
Original member Current member NCBI NM_002194.4 NP_002185.1 Accepted alive Link to Nucleotide Sequence:NM_002194.4Link to Protein Sequence:NP_002185.1Re-query CCDS DB by Nucleotide ID:NM_002194Re-query CCDS DB by Protein ID:NP_002185Link to BLAST:NP_002185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122400.1 399 P49441 399 100% 0 0
NP_002185.1 399 P49441 399 100% 0 0

Chromosomal Locations for CCDS 2305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 190360103 190360306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190362627 190362687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190366695 190366895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190369103 190369277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190370844 190371402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGTCAGATATCCTCCGGGAGCTGCTCTGTGTCTCTGAGAAGGCTGCTAACATTGCCCGGGCGTGCAGAC
AGCAGGAAGCCCTCTTCCAGCTGCTGATCGAAGAAAAGAAAGAGGGAGAAAAGAACAAGAAGTTTGCAGT
TGACTTCAAGACGCTGGCTGATGTACTGGTACAGGAAGTTATAAAACAGAATATGGAGAACAAGTTTCCA
GGCTTGGAAAAAAATATTTTTGGAGAAGAATCCAATGAGTTTACTAATGACTGGGGGGAAAAGATTACCT
TGAGGTTGTGTTCAACAGAGGAGGAAACAGCAGAGCTTCTTAGCAAAGTCCTCAATGGTAACAAGGTGGC
ATCTGAAGCATTAGCCAGGGTTGTTCATCAGGATGTTGCCTTTACTGACCCAACTCTGGATTCCACAGAG
ATCAATGTTCCACAGGACATTTTGGGAATTTGGGTGGACCCCATAGATTCAACTTATCAGTATATAAAAG
GTTCTGCTGACATTAAATCCAACCAGGGAATCTTCCCCTGTGGACTTCAGTGTGTCACCATTTTAATTGG
TGTCTATGACATACAGACAGGGGTTCCCCTGATGGGAGTCATCAATCAACCTTTTGTGTCACGAGATCCA
AACACCCTCAGGTGGAAAGGACAGTGCTATTGGGGCCTTTCTTACATGGGGACCAACATGCATTCACTAC
AGCTCACCATCTCTAGAAGAAACGGCAGTGAAACACACACTGGAAACACCGGCTCTGAGGCAGCATTCTC
CCCCAGTTTTTCAGCCGTAATTAGTACAAGTGAAAAGGAGACTATCAAAGCTGCATTGTCACGTGTGTGT
GGAGATCGCATATTTGGGGCAGCTGGGGCTGGTTATAAGAGCCTATGTGTTGTCCAAGGCCTCGTTGACA
TTTACATCTTTTCAGAAGATACCACATTCAAATGGGACTCTTGTGCTGCTCATGCCATACTGAGGGCCAT
GGGTGGGGGAATAGTAGACTTGAAAGAATGCTTAGAAAGAAATCCAGAAACAGGGCTTGATTTGCCACAG
TTGGTGTACCACGTGGAAAATGAGGGTGCTGCTGGGGTGGATCGGTGGGCCAACAAGGGAGGACTCATTG
CATACAGATCCAGGAAGCGGCTGGAGACATTCCTGAGCCTCCTGGTCCAAAACCTGGCACCTGCAGAGAC
GCATACCTAG

Translation (399 aa):
MSDILRELLCVSEKAANIARACRQQEALFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKQNMENKFP
GLEKNIFGEESNEFTNDWGEKITLRLCSTEEETAELLSKVLNGNKVASEALARVVHQDVAFTDPTLDSTE
INVPQDILGIWVDPIDSTYQYIKGSADIKSNQGIFPCGLQCVTILIGVYDIQTGVPLMGVINQPFVSRDP
NTLRWKGQCYWGLSYMGTNMHSLQLTISRRNGSETHTGNTGSEAAFSPSFSAVISTSEKETIKAALSRVC
GDRIFGAAGAGYKSLCVVQGLVDIYIFSEDTTFKWDSCAAHAILRAMGGGIVDLKECLERNPETGLDLPQ
LVYHVENEGAAGVDRWANKGGLIAYRSRKRLETFLSLLVQNLAPAETHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH