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Report for CCDS12673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12673.1 Public Homo sapiens 19 SIX5 24 110 108 CCDS HistoryNCBI Gene:147912Re-query CCDS DB by CCDS ID:12673.1Re-query CCDS DB by GeneID:147912See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12673.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317578.7 ENSP00000316842.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317578.7Link to Ensembl Protein Viewer:ENSP00000316842.4Re-query CCDS DB by Nucleotide ID:ENST00000317578Re-query CCDS DB by Protein ID:ENSP00000316842
Original member Current member NCBI NM_175875.5 NP_787071.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175875.5Link to Protein Sequence:NP_787071.3Re-query CCDS DB by Nucleotide ID:NM_175875Re-query CCDS DB by Protein ID:NP_787071Link to BLAST:NP_787071.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787071.3 739 Q8N196 739 100% 0 0

Chromosomal Locations for CCDS 12673.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45765501 45766111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45766350 45767155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45768042 45768844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGGCTACCTTGCCTGCGGAGCCGAGCGCGGGGCCGGCGGCTGGGGGGGAGGCGGTGGCGGCGGCGGCGG
CGACCGAAGAGGAGGAGGAGGAAGCGCGCCAGCTCTTGCAGACTTTGCAGGCGGCCGAGGGTGAGGCGGC
GGCGGCGGCCGGGGCCGGGGCGGGCGCAGCGGCTGCGGGAGCTGAGGGCCCGGGATCCCCGGGCGTCCCC
GGGTCGCCCCCCGAGGCCGCTTCCGAACCGCCCACGGGCCTCCGCTTCTCGCCCGAGCAGGTGGCGTGCG
TCTGCGAGGCGCTGCTCCAGGCGGGCCACGCCGGCCGCTTGAGCCGCTTCCTGGGCGCACTGCCCCCGGC
CGAGCGCCTACGTGGCAGCGACCCGGTGTTGCGCGCGCGGGCCCTGGTGGCCTTCCAGCGGGGCGAGTAC
GCCGAGCTCTACCGGCTACTCGAGAGCCGCCCCTTCCCCGCCGCCCACCACGCCTTCCTGCAGGACCTCT
ACCTGCGCGCGCGCTACCATGAGGCCGAGCGGGCCCGCGGCCGCGCGCTTGGCGCAGTGGACAAGTATCG
ACTGCGCAAGAAGTTCCCGCTGCCCAAGACCATCTGGGACGGCGAGGAGACAGTCTACTGCTTCAAGGAG
CGCTCCCGCGCAGCGCTCAAGGCCTGCTACCGCGGCAACCGCTACCCCACGCCGGACGAGAAGCGCCGCC
TGGCCACACTCACCGGCCTGTCGCTCACGCAGGTCAGCAACTGGTTCAAGAACCGGCGACAGCGCGACCG
GACCGGGGCCGGAGGCGGCGCGCCCTGCAAGAGCGAGTCTGATGGGAATCCCACGACTGAGGACGAGTCC
AGCCGAAGTCCTGAGGACCTGGAGAGAGGGGCGGCCCCAGTGTCCGCCGAGGCCGCTGCCCAGGGCTCCA
TATTCCTGGCAGGGACCGGCCCTCCCGCGCCTTGCCCGGCTTCCTCCTCCATCCTGGTGAACGGGAGCTT
CCTGGCAGCCAGCGGCTCCCCAGCAGTGCTCCTCAACGGGGGCCCCGTCATCATCAACGGCCTGGCCCTG
GGCGAGGCCTCCAGCCTGGGCCCGCTGCTGCTCACTGGGGGCGGGGGTGCCCCTCCACCGCAGCCCAGCC
CTCAGGGGGCCAGCGAGACCAAGACCTCTCTGGTCCTGGACCCTCAGACAGGGGAGGTGCGGCTGGAGGA
GGCTCAGTCGGAGGCCCCTGAGACCAAAGGGGCCCAGGTGGCTGCTCCGGGACCAGCCCTTGGAGAGGAG
GTCCTGGGGCCCCTGGCCCAAGTGGTGCCTGGCCCCCCGACGGCTGCCACCTTTCCTCTGCCCCCGGGGC
CAGTGCCTGCTGTGGCTGCCCCACAAGTGGTACCGCTCTCCCCACCCCCGGGGTATCCCACGGGCCTGAG
CCCCACCTCCCCACTATTGAACCTGCCCCAGGTAGTACCCACCTCACAGGTGGTGACCCTGCCCCAGGCT
GTGGGGCCCCTGCAGCTGTTGGCAGCCGGGCCAGGCAGCCCTGTGAAGGTGGCAGCTGCAGCAGGCCCTG
CCAATGTGCACCTCATCAACTCCGGGGTGGGCGTGACTGCCCTGCAGCTGCCTTCGGCCACTGCCCCAGG
AAACTTCCTCCTGGCCAACCCTGTGTCTGGCAGCCCCATCGTGACGGGTGTGGCCCTGCAGCAGGGCAAG
ATCATCCTCACCGCCACCTTCCCCACCAGCATGCTCGTCTCCCAGGTCCTGCCGCCAGCCCCCGGCCTGG
CCCTGCCACTGAAGCCAGAGACGGCCATCTCCGTGCCTGAGGGAGGCCTCCCGGTGGCCCCCAGCCCTGC
TCTCCCAGAGGCTCACGCCCTAGGCACCCTTTCTGCACAGCAGCCACCCCCCGCCGCTGCCACCACCTCC
AGCACCAGCCTGCCCTTCTCCCCTGACTCCCCTGGCCTCCTGCCCAACTTCCCGGCGCCCCCACCAGAGG
GGCTGATGTTGTCACCCGCGGCCGTGCCTGTCTGGTCAGCAGGGCTGGAACTAAGCGCAGGAACAGAGGG
GCTGCTGGAAGCGGAAAAGGGGCTGGGGACACAGGCCCCCCACACCGTGCTGAGGCTGCCAGACCCCGAC
CCTGAGGGGCTGCTCCTGGGGGCCACCGCAGGGGGTGAGGTTGACGAGGGGTTGGAAGCTGAGGCCAAGG
TTCTGACCCAGCTCCAGTCGGTGCCTGTGGAGGAGCCCTTGGAACTGTGA

Translation (739 aa):
MATLPAEPSAGPAAGGEAVAAAAATEEEEEEARQLLQTLQAAEGEAAAAAGAGAGAAAAGAEGPGSPGVP
GSPPEAASEPPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLRGSDPVLRARALVAFQRGEY
AELYRLLESRPFPAAHHAFLQDLYLRARYHEAERARGRALGAVDKYRLRKKFPLPKTIWDGEETVYCFKE
RSRAALKACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQRDRTGAGGGAPCKSESDGNPTTEDES
SRSPEDLERGAAPVSAEAAAQGSIFLAGTGPPAPCPASSSILVNGSFLAASGSPAVLLNGGPVIINGLAL
GEASSLGPLLLTGGGGAPPPQPSPQGASETKTSLVLDPQTGEVRLEEAQSEAPETKGAQVAAPGPALGEE
VLGPLAQVVPGPPTAATFPLPPGPVPAVAAPQVVPLSPPPGYPTGLSPTSPLLNLPQVVPTSQVVTLPQA
VGPLQLLAAGPGSPVKVAAAAGPANVHLINSGVGVTALQLPSATAPGNFLLANPVSGSPIVTGVALQQGK
IILTATFPTSMLVSQVLPPAPGLALPLKPETAISVPEGGLPVAPSPALPEAHALGTLSAQQPPPAAATTS
STSLPFSPDSPGLLPNFPAPPPEGLMLSPAAVPVWSAGLELSAGTEGLLEAEKGLGTQAPHTVLRLPDPD
PEGLLLGATAGGEVDEGLEAEAKVLTQLQSVPVEEPLEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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