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Report for CCDS12647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12647.1 Public Homo sapiens 19 APOE 24 110 108 CCDS HistoryNCBI Gene:348Re-query CCDS DB by CCDS ID:12647.1Re-query CCDS DB by GeneID:348See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12647.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252486.9 ENSP00000252486.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252486.9Link to Ensembl Protein Viewer:ENSP00000252486.3Re-query CCDS DB by Nucleotide ID:ENST00000252486Re-query CCDS DB by Protein ID:ENSP00000252486
Original member Current member NCBI NM_000041.4 NP_000032.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000041.4Link to Protein Sequence:NP_000032.1Re-query CCDS DB by Nucleotide ID:NM_000041Re-query CCDS DB by Protein ID:NP_000032Link to BLAST:NP_000032.1
Original member Current member NCBI NM_001302689.2 NP_001289618.1 Accepted alive Link to Nucleotide Sequence:NM_001302689.2Link to Protein Sequence:NP_001289618.1Re-query CCDS DB by Nucleotide ID:NM_001302689Re-query CCDS DB by Protein ID:NP_001289618Link to BLAST:NP_001289618.1
Original member Current member NCBI NM_001302690.2 NP_001289619.1 Accepted alive Link to Nucleotide Sequence:NM_001302690.2Link to Protein Sequence:NP_001289619.1Re-query CCDS DB by Nucleotide ID:NM_001302690Re-query CCDS DB by Protein ID:NP_001289619Link to BLAST:NP_001289619.1
Original member Current member NCBI NM_001302691.2 NP_001289620.1 Accepted alive Link to Nucleotide Sequence:NM_001302691.2Link to Protein Sequence:NP_001289620.1Re-query CCDS DB by Nucleotide ID:NM_001302691Re-query CCDS DB by Protein ID:NP_001289620Link to BLAST:NP_001289620.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000032.1 317 P02649 317 100% 0 0
NP_001289618.1 317 P02649 317 100% 0 0
NP_001289619.1 317 P02649 317 100% 0 0
NP_001289620.1 317 P02649 317 100% 0 0

Chromosomal Locations for CCDS 12647.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44906625 44906667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44907760 44907952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44908533 44909250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAAGGTTCTGTGGGCTGCGTTGCTGGTCACATTCCTGGCAGGATGCCAGGCCAAGGTGGAGCAAGCGG
TGGAGACAGAGCCGGAGCCCGAGCTGCGCCAGCAGACCGAGTGGCAGAGCGGCCAGCGCTGGGAACTGGC
ACTGGGTCGCTTTTGGGATTACCTGCGCTGGGTGCAGACACTGTCTGAGCAGGTGCAGGAGGAGCTGCTC
AGCTCCCAGGTCACCCAGGAACTGAGGGCGCTGATGGACGAGACCATGAAGGAGTTGAAGGCCTACAAAT
CGGAACTGGAGGAACAACTGACCCCGGTGGCGGAGGAGACGCGGGCACGGCTGTCCAAGGAGCTGCAGGC
GGCGCAGGCCCGGCTGGGCGCGGACATGGAGGACGTGTGCGGCCGCCTGGTGCAGTACCGCGGCGAGGTG
CAGGCCATGCTCGGCCAGAGCACCGAGGAGCTGCGGGTGCGCCTCGCCTCCCACCTGCGCAAGCTGCGTA
AGCGGCTCCTCCGCGATGCCGATGACCTGCAGAAGCGCCTGGCAGTGTACCAGGCCGGGGCCCGCGAGGG
CGCCGAGCGCGGCCTCAGCGCCATCCGCGAGCGCCTGGGGCCCCTGGTGGAACAGGGCCGCGTGCGGGCC
GCCACTGTGGGCTCCCTGGCCGGCCAGCCGCTACAGGAGCGGGCCCAGGCCTGGGGCGAGCGGCTGCGCG
CGCGGATGGAGGAGATGGGCAGCCGGACCCGCGACCGCCTGGACGAGGTGAAGGAGCAGGTGGCGGAGGT
GCGCGCCAAGCTGGAGGAGCAGGCCCAGCAGATACGCCTGCAGGCCGAGGCCTTCCAGGCCCGCCTCAAG
AGCTGGTTCGAGCCCCTGGTGGAAGACATGCAGCGCCAGTGGGCCGGGCTGGTGGAGAAGGTGCAGGCTG
CCGTGGGCACCAGCGCCGCCCCTGTGCCCAGCGACAATCACTGA

Translation (317 aa):
MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELL
SSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEV
QAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRA
ATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQARLK
SWFEPLVEDMQRQWAGLVEKVQAAVGTSAAPVPSDNH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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