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Report for CCDS33010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33010.1 Public Homo sapiens 19 YIF1B 24 110 108 CCDS HistoryNCBI Gene:90522Re-query CCDS DB by CCDS ID:33010.1Re-query CCDS DB by GeneID:90522See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33010.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339413.11 ENSP00000343435.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339413.11Link to Ensembl Protein Viewer:ENSP00000343435.5Re-query CCDS DB by Nucleotide ID:ENST00000339413Re-query CCDS DB by Protein ID:ENSP00000343435
Original member Current member NCBI NM_001039672.3 NP_001034761.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039672.3Link to Protein Sequence:NP_001034761.1Re-query CCDS DB by Nucleotide ID:NM_001039672Re-query CCDS DB by Protein ID:NP_001034761Link to BLAST:NP_001034761.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034761.1 314 Q5BJH7-1 314 100% 0 0

Chromosomal Locations for CCDS 33010.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38305352 38305507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38307428 38307521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38307597 38307752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38308792 38308849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38308979 38309057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38309224 38309328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38309405 38309643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38315860 38315917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGCACCCGGCAGGCTTGGCGGCGGCGGCTGCGGGGACGCCCCGGCTGCGTAAGTGGCCCTCGAAGCGGA
GGATCCCTGTGTCCCAGCCGGGCATGGCCGACCCCCACCAGCTTTTCGATGACACAAGTTCAGCCCAGAG
CCGGGGCTATGGGGCCCAGCGGGCACCTGGTGGCCTGAGTTATCCTGCAGCCTCTCCCACGCCCCATGCA
GCCTTCCTGGCTGACCCGGTGTCCAACATGGCCATGGCCTATGGGAGCAGCCTGGCCGCGCAGGGCAAGG
AGCTGGTGGATAAGAACATCGACCGCTTCATCCCCATCACCAAGCTCAAGTATTACTTTGCTGTGGACAC
CATGTATGTGGGCAGAAAGCTGGGCCTGCTGTTCTTCCCCTACCTACACCAGGACTGGGAAGTGCAGTAC
CAACAGGACACCCCGGTGGCCCCCCGCTTTGACGTCAATGCCCCGGACCTCTACATTCCAGCAATGGCTT
TCATCACCTACGTTTTGGTGGCTGGTCTTGCGCTGGGGACCCAGGATAGGTTCTCCCCAGACCTCCTGGG
GCTGCAAGCGAGCTCAGCCCTGGCCTGGCTGACCCTGGAGGTGCTGGCCATCCTGCTCAGCCTCTATCTG
GTCACTGTCAACACCGACCTCACCACCATCGACCTGGTGGCCTTCTTGGGCTACAAATATGTCGGGATGA
TTGGCGGGGTCCTCATGGGCCTGCTCTTCGGGAAGATTGGCTACTACCTGGTGCTGGGCTGGTGCTGCGT
AGCCATCTTTGTGTTCATGATCCGGACGCTGCGGCTGAAGATCTTGGCAGACGCAGCAGCTGAGGGGGTC
CCGGTGCGTGGGGCCCGGAACCAGCTGCGCATGTACCTGACCATGGCGGTGGCGGCGGCGCAGCCTATGC
TCATGTACTGGCTCACCTTCCACCTGGTGCGGTGA

Translation (314 aa):
MHPAGLAAAAAGTPRLRKWPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHA
AFLADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQY
QQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYL
VTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAAAEGV
PVRGARNQLRMYLTMAVAAAQPMLMYWLTFHLVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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