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Report for CCDS86620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86620.1 Public Homo sapiens 17 SEPTIN4 24 110 108 CCDS HistoryNCBI Gene:5414Re-query CCDS DB by CCDS ID:86620.1Re-query CCDS DB by GeneID:5414See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000580844.5 ENSP00000462727.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580844.5Link to Ensembl Protein Viewer:ENSP00000462727.1Re-query CCDS DB by Nucleotide ID:ENST00000580844Re-query CCDS DB by Protein ID:ENSP00000462727
Original member Current member NCBI NM_001363803.2 NP_001350732.1 Accepted alive Link to Nucleotide Sequence:NM_001363803.2Link to Protein Sequence:NP_001350732.1Re-query CCDS DB by Nucleotide ID:NM_001363803Re-query CCDS DB by Protein ID:NP_001350732Link to BLAST:NP_001350732.1

Chromosomal Locations for CCDS 86620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 58520426 58520485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58520743 58520842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58520998 58521160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58521254 58521350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58521545 58521646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58521736 58521853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58521967 58522101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58525078 58525201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58525695 58525781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58526220 58526313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58529115 58529174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGACCGTTCACTGGGATGGCAAGGGAATTCTGTCCCTGAGGACAGGACTGAAGCTGGGGATGACAAGG
AGTATGTGGGCTTTGCAACCCTCCCCAACCAAGTCCACCGAAAGTCCGTGAAGAAAGGCTTTGACTTTAC
CCTCATGGTGGCAGGAGAGTCTGGCCTGGGCAAATCCACACTTGTCAATAGCCTCTTCCTCACTGATCTG
TACCGGGACCGGAAACTTCTTGGTGCTGAAGAGAGGATCATGCAAACTGTGGAGATCACTAAGCATGCAG
TGGACATAGAAGAGAAGGGTGTGAGGCTGCGGCTCACCATTGTGGACACACCAGGTTTTGGGGATGCAGT
CAACAACACAGAGTGCTGGAAGCCTGTGGCAGAATACATTGATCAGCAGTTTGAGCAGTATTTCCGAGAC
GAGAGTGGCCTGAACCGAAAGAACATCCAAGACAACAGGGTGCACTGCTGCCTGTACTTCATCTCACCCT
TCGGCCATGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCAGCGGGTCAACATCGTGCC
TATCCTGGCTAAGGCAGACACACTGACACCTCCCGAAGTGGACCACAAGAAACGCAAAATCCGGGAGGAG
ATTGAGCATTTTGGAATCAAGATCTATCAATTCCCAGACTGTGACTCTGATGAGGATGAGGACTTCAAAT
TGCAGGACCAAGCCCTAAAGGAAAGCATCCCATTTGCAGTAATTGGCAGCAACACTGTAGTAGAGGCCAG
AGGGCGGCGAGTTCGGGGTCGACTCTACCCCTGGGGCATCGTGGAAGTGGAAAACCCAGGGCACTGCGAC
TTTGTGAAGCTGAGGACAATGCTGGTACGTACCCACATGCAGGACCTGAAGGATGTGACACGGGAGACAC
ATTATGAGAACTACCGGGCACAGTGCATCCAGAGCATGACCCGCCTGGTGGTGAAGGAACGGAATCGCAA
CAAACTGACTCGGGAAAGTGGTACCGACTTCCCCATCCCTGCTGTCCCACCAGGGACAGATCCAGAAACT
GAGAAGCTTATCCGAGAGAAAGATGAGGAGCTGCGGCGGATGCAGGAGATGCTACACAAAATACAAAAAC
AGATGAAGGAGAACTATTAA

Translation (379 aa):
MDRSLGWQGNSVPEDRTEAGDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDL
YRDRKLLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRD
ESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDHKKRKIREE
IEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCD
FVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPIPAVPPGTDPET
EKLIREKDEELRRMQEMLHKIQKQMKENY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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