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Report for CCDS11262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11262.1 Public Homo sapiens 17 RNF135 24 110 108 CCDS HistoryNCBI Gene:84282Re-query CCDS DB by CCDS ID:11262.1Re-query CCDS DB by GeneID:84282See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11262.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328381.10 ENSP00000328340.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328381.10Link to Ensembl Protein Viewer:ENSP00000328340.5Re-query CCDS DB by Nucleotide ID:ENST00000328381Re-query CCDS DB by Protein ID:ENSP00000328340
Original member Current member NCBI NM_032322.4 NP_115698.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032322.4Link to Protein Sequence:NP_115698.3Re-query CCDS DB by Nucleotide ID:NM_032322Re-query CCDS DB by Protein ID:NP_115698Link to BLAST:NP_115698.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115698.3 432 Q8IUD6-1 432 100% 0 0

Chromosomal Locations for CCDS 11262.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 30971074 30971445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30984617 30984760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30987944 30988106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30997242 30997331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30998662 30999191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGCGGGCCTGGGCCTGGGCTCCGCCGTTCCCGTGTGGCTGGCCGAGGACGACCTCGGCTGCATCATCT
GC
CAGGGGCTGCTGGACTGGCCCGCCACGCTGCCCTGCGGCCACAGCTTCTGCCGCCACTGCCTGGAGGC
C
CTGTGGGGCGCCCGCGACGCCCGCCGCTGGGCCTGCCCCACTTGCCGCCAGGGCGCCGCGCAGCAGCCG
CAC
CTGCGGAAGAACACGCTACTGCAGGACCTGGCCGACAAGTACCGCCGCGCCGCACGCGAGATACAGG
CG
GGCTCCGACCCTGCCCACTGCCCCTGCCCGGGCTCCAGTTCCCTCTCCAGCGCGGCCGCGAGGCCCCG
G
CGCCGCCCGGAACTGCAGCGGGTGGCAGTAGAGAAGAGCATCACAGAAGTTGCTCAGGAGCTGACAGAG
CTG
GTGGAACATCTTGTAGACATTGTCAGAAGCCTGCAGAATCAGAGGCCCCTATCAGAATCTGGACCAG
AC
AACGAACTGAGCATCCTGGGCAAGGCTTTTTCTTCTGGGGTGGATCTTTCCATGGCTTCTCCAAAGCT
G
GTGACTTCCGACACAGCTGCAGGGAAAATCAGAGATATTCTCCATGACCTAGAAGAAATTCAGGAAAAA
TTA
CAAGAAAGCGTCACCTGGAAAGAGGCTCCTGAAGCACAAATGCAGGGAGAACTCCTGGAAGCCCCGT
CT
TCCTCCTCATGCCCATTGCCTGACCAGAGCCACCCTGCACTCAGGAGAGCTTCTCGGTTTGCTCAGTG
G
GCCATCCATCCAACCTTTAACTTGAAGAGCCTTTCCTGCAGCCTGGAGGTGTCCAAGGATTCCCGTACA
GTG
ACTGTGTCTCACCGCCCACAACCCTATCGCTGGAGCTGTGAGAGGTTTTCTACCAGCCAGGTCTTAT
GT
TCCCAGGCCCTGTCTTCTGGAAAGCATTACTGGGAAGTGGACACTAGGAATTGCAGCCACTGGGCAGT
T
GGGGTGGCTTCCTGGGAGATGAGCCGCGACCAGGTCCTGGGAAGGACTATGGACTCTTGTTGTGTGGAA
TGG
AAGGGGACTAGCCAGCTCTCTGCATGGCACATGGTCAAGGAAACTGTCCTTGGCTCAGACAGACCTG
GG
GTGGTGGGCATCTGGCTGAACCTTGAGGAGGGAAAGCTTGCCTTCTATTCAGTGGACAATCAGGAGAA
G
CTTCTGTATGAGTGTACCATCTCTGCCTCCTCTCCTTTGTACCCTGCCTTCTGGCTGTATGGCTTACAT
CCT
GGAAATTACCTGATAATAAAGCAAGTAAAGGTGTAA


Translation (432 aa):
MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQP
H
LRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRPELQR
VAVEKSITEVAQELTE
L
VEHLVDIVRSLQNQRPLSESGPDNELSILGK
AFSSGVDLSMASPKLVTSDTAAGKIRDILHDLEEIQEK
L
QESVTWKEAPEAQMQ
GELLEAPSSSSCPLPDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRT
V
TVSHRPQPYRWSCERFSTSQVLCSQALSSGKHYWEVDTRNCSHWAVGVASWEMSRDQVLGRTMDSCCVE
W
KGTSQLSAWHMVKETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAFWLYGLH
P
GNYLIIKQVKV




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 Genome Browser Links:   Ensembl Genome Browser
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