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Report for CCDS10671.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10671.2 Public Homo sapiens 16 GDPD3 24 110 108 CCDS HistoryNCBI Gene:79153Re-query CCDS DB by CCDS ID:10671.2Re-query CCDS DB by GeneID:79153See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10671.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406256.8 ENSP00000384363.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000406256.8Link to Ensembl Protein Viewer:ENSP00000384363.3Re-query CCDS DB by Nucleotide ID:ENST00000406256Re-query CCDS DB by Protein ID:ENSP00000384363
Original member Current member NCBI NM_024307.3 NP_077283.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024307.3Link to Protein Sequence:NP_077283.2Re-query CCDS DB by Nucleotide ID:NM_024307Re-query CCDS DB by Protein ID:NP_077283Link to BLAST:NP_077283.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077283.2 318 Q7L5L3-2 318 100% 0 0

Chromosomal Locations for CCDS 10671.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30104872 30105009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30108213 30108264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30108373 30108432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30111388 30111521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30112132 30112221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30112306 30112424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30112523 30112568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30112658 30112793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30113022 30113064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30113340 30113478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGAGCCTTTTGCTGTACTATGCCCTCCCTGCCCTGGGCAGCTATGCCATGCTCTCCATCTTCTTCCTGC
GCCGGCCTCATCTGCTGCACACGCCCAGGGCTCCCACCTTCCGCATCCGCCTGGGGGCCCACCGAGGAGG
ATCTGGAGAGCTGCTGGAGAACACCATGGAGGCCATGGAGAACTCCATGGCCCAGCGCTCGGACCTCCTG
GAGCTCGACTGTCAGCTGACACGGGACAGAGTGGTGGTGGTGTCACATGATGAGAACCTGTGCCGCCAGT
CGGGCCTAAACAGGGATGTGGGCAGCCTGGACTTCGAGGACCTGCCCCTCTACAAGGAGAAGCTGGAGGT
TTACTTCTCTCCAGGCCACTTTGCTCACGGGTCAGACCGGCGCATGGTTCGTCTGGAGGACCTGTTCCAG
AGGTTTCCAAGGACACCCATGAGCGTAGAGATCAAAGGGAAGAACGAAGAGCTCATCCGTGAGATAGCAG
GCTTGGTGAGACGCTATGACCGTAATGAAATCACCATCTGGGCCTCGGAGAAGAGCTCGGTCATGAAGAA
ATGCAAGGCTGCCAACCCCGAGATGCCCCTGTCCTTCACAATAAGCCGAGGATTCTGGGTGCTGCTTTCC
TACTACCTGGGGCTGCTGCCCTTCATCCCAATCCCTGAGAAGTTCTTCTTCTGCTTCCTGCCCAACATCA
TCAACAGGACCTATTTCCCATTTTCCTGCTCTTGCCTGAACCAGTTATTGGCTGTGGTTTCGAAATGGCT
GATCATGAGGAAGAGTCTGATCCGACACTTGGAGGAGCGAGGGGTGCAGGTGGTCTTTTGGTGCCTTAAT
GAAGAGTCGGATTTTGAAGCAGCCTTCAGCGTGGGAGCCACTGGCGTCATAACGGATTATCCCACAGCCC
TGCGGCACTACCTGGACAACCATGGACCAGCTGCCCGGACCTCCTAA

Translation (318 aa):
MSLLLYYALPALGSYAMLSIFFLRRPHLLHTPRAPTFRIRLGAHRGGSGELLENTMEAMENSMAQRSDLL
ELDCQLTRDRVVVVSHDENLCRQSGLNRDVGSLDFEDLPLYKEKLEVYFSPGHFAHGSDRRMVRLEDLFQ
RFPRTPMSVEIKGKNEELIREIAGLVRRYDRNEITIWASEKSSVMKKCKAANPEMPLSFTISRGFWVLLS
YYLGLLPFIPIPEKFFFCFLPNIINRTYFPFSCSCLNQLLAVVSKWLIMRKSLIRHLEERGVQVVFWCLN
EESDFEAAFSVGATGVITDYPTALRHYLDNHGPAARTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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