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Report for CCDS45453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45453.1 Public Homo sapiens 16 SPNS1 24 110 108 CCDS HistoryNCBI Gene:83985Re-query CCDS DB by CCDS ID:45453.1Re-query CCDS DB by GeneID:83985See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352260.11 ENSP00000306050.10 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352260.11Link to Ensembl Protein Viewer:ENSP00000306050.10Re-query CCDS DB by Nucleotide ID:ENST00000352260Re-query CCDS DB by Protein ID:ENSP00000306050
Original member Current member NCBI NM_001142449.2 NP_001135921.1 Accepted alive Link to Nucleotide Sequence:NM_001142449.2Link to Protein Sequence:NP_001135921.1Re-query CCDS DB by Nucleotide ID:NM_001142449Re-query CCDS DB by Protein ID:NP_001135921Link to BLAST:NP_001135921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135921.1 454 Q9H2V7-3 454 100% 0 0

Chromosomal Locations for CCDS 45453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28975152 28975392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28977908 28978044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28979155 28979306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28979405 28979471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28981470 28981615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28982356 28982545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28982857 28982922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28983192 28983290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28983786 28983957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28984205 28984299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGCCGGGTCCGACACCGCGCCCTTCCTCAGCCAGGCGGATGACCCGGACGACGGGCCAGTGCCTGGCA
CCCCGGGGTTGCCAGGGTCCACGGGGAACCCGAAGTCCGAGGAGCCCGAGGTCCCGGACCAGGAGGGGCT
GCAGCGCATCACCGGCCTGTCTCCCGGCCGTTCGGCTCTCATAGTGGCGGTGCTGTGCTACATCAATCTC
CTGAACTACATGGACCGCTTCACCGTGGCTGTGTTCATCTCCAGTTACATGGTGTTGGCACCTGTGTTTG
GCTACCTGGGTGACAGGTACAATCGGAAGTATCTCATGTGCGGGGGCATTGCCTTCTGGTCCCTGGTGAC
ACTGGGGTCATCCTTCATCCCCGGAGAGCATTTCTGGCTGCTCCTCCTGACCCGGGGCCTGGTGGGGGTC
GGGGAGGCCAGTTATTCCACCATCGCGCCCACTCTCATTGCCGACCTCTTTGTGGCCGACCAGCGGAGCC
GGATGCTCAGCATCTTCTACTTTGCCATTCCGGTGGGCAGTGGTCTGGGCTACATTGCAGGCTCCAAAGT
GAAGGATATGGCTGGAGACTGGCACTGGGCTCTGAGGGTGACACCGGGTCTAGGAGTGGTGGCCGTTCTG
CTGCTGTTCCTGGTAGTGCGGGAGCCGCCAAGGGGAGCCGTGGAGCGCCACTCAGATTTGCCACCCCTGA
ACCCCACCTCGTGGTGGGCAGATCTGAGGGCTCTGGCAAGAAATCTCATCTTTGGACTCATCACCTGCCT
GACCGGAGTCCTGGGTGTGGGCCTGGGTGTGGAGATCAGCCGCCGGCTCCGCCACTCCAACCCCCGGGCT
GATCCCCTGGTCTGTGCCACTGGCCTCCTGGGCTCTGCACCCTTCCTCTTCCTGTCCCTTGCCTGCGCCC
GTGGTAGCATCGTGGCCACTTATATTTTCATCTTCATTGGAGAGACCCTCCTGTCCATGAACTGGGCCAT
CGTGGCCGACATTCTGCTGTACGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCCAGATCGTG
CTGTCCCACCTGCTGGGTGATGCTGGGAGCCCCTACCTCATTGGCCTGATCTCTGACCGCCTGCGCCGGA
ACTGGCCCCCCTCCTTCTTGTCCGAGTTCCGGGCTCTGCAGTTCTCGCTCATGCTCTGCGCGTTTGTTGG
GGCACTGGGCGGCGCAGCCTTCCTGGGCACCGCCATCTTCATTGAGGCCGACCGCCGGCGGGCACAGCTG
CACGTGCAGGGCCTGCTGCACGAAGCAGGGTCCACAGACGACCGGATTGTGGTGCCCCAGCGGGGCCGCT
CCACCCGCGTGCCCGTGGCCAGTGTGCTCATCTGA

Translation (454 aa):
MAGSDTAPFLSQADDPDDGPVPGTPGLPGSTGNPKSEEPEVPDQEGLQRITGLSPGRSALIVAVLCYINL
LNYMDRFTVAVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLGSSFIPGEHFWLLLLTRGLVGV
GEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDMAGDWHWALRVTPGLGVVAVL
LLFLVVREPPRGAVERHSDLPPLNPTSWWADLRALARNLIFGLITCLTGVLGVGLGVEISRRLRHSNPRA
DPLVCATGLLGSAPFLFLSLACARGSIVATYIFIFIGETLLSMNWAIVADILLYVVIPTRRSTAEAFQIV
LSHLLGDAGSPYLIGLISDRLRRNWPPSFLSEFRALQFSLMLCAFVGALGGAAFLGTAIFIEADRRRAQL
HVQGLLHEAGSTDDRIVVPQRGRSTRVPVASVLI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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