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Report for CCDS32406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32406.1 Public Homo sapiens 16 PALB2 24 110 108 CCDS HistoryNCBI Gene:79728Re-query CCDS DB by CCDS ID:32406.1Re-query CCDS DB by GeneID:79728See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32406.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261584.9 ENSP00000261584.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261584.9Link to Ensembl Protein Viewer:ENSP00000261584.4Re-query CCDS DB by Nucleotide ID:ENST00000261584Re-query CCDS DB by Protein ID:ENSP00000261584
Original member Current member NCBI NM_024675.4 NP_078951.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024675.4Link to Protein Sequence:NP_078951.2Re-query CCDS DB by Nucleotide ID:NM_024675Re-query CCDS DB by Protein ID:NP_078951Link to BLAST:NP_078951.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078951.2 1186 Q86YC2 1186 100% 0 0

Chromosomal Locations for CCDS 32406.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 23603459 23603669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23607864 23608012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23614004 23614091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23621362 23621478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23622969 23623130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23624009 23624094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23626236 23626397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23629204 23629275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23629640 23630469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23634862 23636334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23637850 23637952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23638070 23638129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23641110 23641157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3561 nt):
ATGGACGAGCCTCCCGGGAAGCCCCTCAGCTGTGAGGAGAAGGAAAAGTTAAAGGAGAAATTAGCATTCT
TGAAAAGGGAATACAGCAAGACACTAGCCCGCCTTCAGCGTGCCCAAAGAGCTGAAAAGATTAAGCATTC
TATTAAGAAAACAGTAGAAGAACAAGATTGTTTGTCTCAGCAGGATCTCTCACCGCAGCTAAAACACTCA
GAACCTAAAAATAAAATATGTGTTTATGACAAGTTACACATCAAAACCCATCTTGATGAAGAAACTGGAG
AAAAGACATCTATCACACTTGATGTTGGGCCTGAGTCCTTTAACCCTGGAGATGGCCCAGGAGGATTACC
TATACAAAGAACAGATGACACCCAAGAACATTTTCCCCACAGGGTCAGTGACCCTAGTGGTGAGCAAAAG
CAGAAGCTGCCAAGCAGAAGAAAGAAGCAGCAGAAGAGGACATTTATTTCACAGGAGAGAGACTGTGTCT
TTGGCACTGATTCACTCAGATTGTCTGGGAAAAGACTAAAGGAACAGGAAGAAATCAGTAGCAAAAATCC
TGCTAGATCACCAGTAACTGAAATAAGAACTCACCTTTTAAGTCTTAAATCTGAACTTCCAGATTCTCCA
GAACCAGTTACAGAAATTAATGAAGACAGTGTATTAATTCCACCAACTGCCCAACCAGAAAAAGGTGTTG
ATACATTCCTAAGAAGACCTAATTTCACCAGGGCGACTACAGTTCCTTTACAGACTCTATCAGATAGCGG
TAGTAGTCAGCACCTTGAACACATTCCTCCTAAAGGTAGCAGTGAACTTACTACTCACGACCTAAAAAAC
ATTAGATTTACTTCACCTGTAAGTTTGGAGGCACAAGGCAAAAAAATGACTGTCTCTACAGATAACCTCC
TTGTAAATAAAGCTATAAGTAAAAGTGGCCAACTGCCCACAAGTTCTAATTTAGAGGCAAATATTTCATG
TTCTCTAAATGAACTCACCTACAATAACTTACCAGCAAATGAAAACCAAAACTTAAAAGAACAAAATCAA
ACAGAGAAATCTTTAAAATCTCCCAGTGACACTCTTGATGGCAGGAATGAAAATCTTCAGGAAAGTGAGA
TTCTAAGTCAACCTAAGAGTCTTAGCCTGGAAGCAACCTCTCCTCTTTCTGCAGAAAAACATTCTTGCAC
AGTGCCTGAAGGCCTTCTGTTTCCTGCAGAATATTATGTTAGAACAACACGAAGCATGTCCAATTGCCAG
AGGAAAGTAGCCGTGGAGGCTGTCATTCAGAGTCATTTGGATGTCAAGAAAAAAGGGTTTAAAAATAAAA
ATAAGGATGCAAGTAAAAATTTAAACCTTTCCAATGAGGAAACTGACCAAAGTGAAATTAGGATGTCTGG
CACATGCACAGGACAACCAAGTTCAAGAACCTCTCAGAAACTTCTCTCATTAACTAAAGTCAGCTCTCCC
GCTGGGCCCACTGAAGATAATGACTTGTCTAGGAAGGCAGTTGCCCAAGCACCTGGTAGAAGATACACAG
GAAAAAGAAAATCAGCCTGCACCCCAGCATCAGATCATTGTGAACCACTTTTGCCAACTTCTAGCCTGTC
GATTGTTAACAGGTCCAAGGAAGAAGTCACCTCACACAAATATCAGCACGAAAAATTATTTATTCAAGTG
AAAGGGAAGAAAAGTCGTCATCAAAAAGAGGATTCCCTTTCTTGGAGTAATAGTGCTTATTTATCCTTGG
ATGATGATGCTTTCACGGCTCCATTTCATAGGGATGGAATGCTGAGTTTAAAGCAACTACTGTCTTTTCT
CAGTATCACAGACTTTCAGTTACCTGATGAAGACTTTGGACCTCTTAAGCTTGAAAAAGTGAAGTCCTGC
TCAGAAAAACCAGTGGAGCCCTTTGAGTCAAAAATGTTTGGAGAGAGACATCTTAAAGAGGGAAGCTGTA
TTTTTCCAGAGGAACTGAGTCCTAAACGCATGGATACAGAAATGGAGGACTTAGAAGAGGACCTTATTGT
TCTACCAGGAAAATCACATCCCAAAAGGCCAAACTCGCAAAGCCAGCATACAAAGACGGGCCTTTCTTCA
TCCATATTACTTTATACTCCTTTAAATACGGTTGCGCCTGATGATAATGACAGGCCTACCACAGACATGT
GTTCACCTGCTTTCCCCATCTTAGGTACTACTCCAGCCTTTGGCCCTCAAGGCTCCTATGAAAAAGCATC
TACAGAAGTTGCTGGACGAACTTGCTGCACACCCCAACTTGCTCATTTGAAAGACTCAGTCTGTCTTGCC
AGTGATACTAAACAATTCGACAGTTCAGGCAGCCCAGCAAAACCACATACCACCCTGCAAGTGTCAGGCA
GGCAAGGACAACCTACCTGTGACTGTGACTCTGTCCCGCCAGGAACACCTCCACCCATTGAGTCATTCAC
TTTTAAAGAAAATCAGCTCTGTAGAAACACATGCCAGGAGCTGCATAAACATTCCGTCGAACAGACTGAA
ACAGCAGAGCTTCCTGCTTCTGATAGCATAAACCCAGGCAACCTACAATTGGTTTCAGAGTTAAAGAATC
CTTCAGGTTCCTGTTCCGTAGATGTGAGTGCCATGTTTTGGGAAAGAGCCGGTTGTAAAGAGCCATGTAT
CATAACTGCTTGCGAAGATGTAGTTTCTCTTTGGAAAGCTCTGGATGCTTGGCAGTGGGAAAAACTTTAT
ACCTGGCACTTCGCAGAGGTTCCAGTATTACAGATAGTTCCAGTGCCTGATGTGTATAATCTCGTGTGTG
TAGCTTTGGGAAATTTGGAAATCAGAGAGATCAGGGCATTGTTTTGTTCCTCTGATGATGAAAGTGAAAA
GCAAGTACTACTGAAGTCTGGAAATATAAAAGCTGTGCTTGGCCTGACAAAGAGGAGGCTAGTTAGTAGC
AGTGGGACCCTTTCTGATCAACAAGTAGAAGTCATGACGTTTGCAGAAGATGGAGGAGGCAAAGAAAACC
AATTTTTGATGCCCCCTGAGGAGACTATACTAACTTTTGCTGAGGTCCAAGGGATGCAAGAAGCTCTGCT
TGGTACTACTATTATGAACAACATTGTTATTTGGAATTTAAAAACTGGTCAACTCCTGAAAAAGATGCAC
ATTGATGATTCTTACCAAGCTTCAGTCTGTCACAAAGCCTATTCTGAAATGGGGCTTCTCTTTATTGTCC
TGAGTCATCCCTGTGCCAAAGAGAGTGAGTCGTTGCGAAGCCCTGTGTTTCAGCTCATTGTGATTAACCC
TAAGACGACTCTCAGCGTGGGTGTGATGCTGTACTGTCTTCCTCCAGGGCAGGCTGGCAGGTTCCTGGAA
GGTGACGTGAAAGATCACTGTGCAGCAGCAATCTTGACTTCTGGAACAATTGCCATTTGGGACTTACTTC
TCGGTCAGTGTACTGCCCTCCTCCCACCTGTCTCTGACCAACATTGGTCTTTTGTGAAATGGTCGGGTAC
AGACTCTCATTTGCTGGCTGGACAAAAAGATGGAAATATATTTGTATACCACTATTCATAA

Translation (1186 aa):
MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQQDLSPQLKHS
EPKNKICVYDKLHIKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQRTDDTQEHFPHRVSDPSGEQK
QKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEISSKNPARSPVTEIRTHLLSLKSELPDSP
EPVTEINEDSVLIPPTAQPEKGVDTFLRRPNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKN
IRFTSPVSLEAQGKKMTVSTDNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQ
TEKSLKSPSDTLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQ
RKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQKLLSLTKVSSP
AGPTEDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVNRSKEEVTSHKYQHEKLFIQV
KGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSLKQLLSFLSITDFQLPDEDFGPLKLEKVKSC
SEKPVEPFESKMFGERHLKEGSCIFPEELSPKRMDTEMEDLEEDLIVLPGKSHPKRPNSQSQHTKTGLSS
SILLYTPLNTVAPDDNDRPTTDMCSPAFPILGTTPAFGPQGSYEKASTEVAGRTCCTPQLAHLKDSVCLA
SDTKQFDSSGSPAKPHTTLQVSGRQGQPTCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTE
TAELPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLY
TWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSS
SGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH
IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLE
GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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