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Report for CCDS32078.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32078.2 Public Homo sapiens 14 NIN 24 110 108 CCDS HistoryNCBI Gene:51199Re-query CCDS DB by CCDS ID:32078.2Re-query CCDS DB by GeneID:51199See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 32078.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32078.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324330.13 ENSP00000324210.10 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324330.13Link to Ensembl Protein Viewer:ENSP00000324210.10Re-query CCDS DB by Nucleotide ID:ENST00000324330Re-query CCDS DB by Protein ID:ENSP00000324210
Original member Current member EBI ENST00000382043.8 ENSP00000371474.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382043.8Link to Ensembl Protein Viewer:ENSP00000371474.4Re-query CCDS DB by Nucleotide ID:ENST00000382043Re-query CCDS DB by Protein ID:ENSP00000371474
Original member Current member NCBI NM_016350.5 NP_057434.4 Accepted alive Link to Nucleotide Sequence:NM_016350.5Link to Protein Sequence:NP_057434.4Re-query CCDS DB by Nucleotide ID:NM_016350Re-query CCDS DB by Protein ID:NP_057434Link to BLAST:NP_057434.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057434.4 1377 Q8N4C6-11 1377 100% 0 0

Chromosomal Locations for CCDS 32078.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50725872 50726066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50729523 50729723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50735516 50735617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50738140 50738286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50739308 50739487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50741582 50741728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50743416 50743529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50744243 50744365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50747992 50748105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50752518 50752733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50754563 50754632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50754742 50754867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50759857 50760359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50761790 50761911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50763826 50763964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50766307 50766396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50766780 50766890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50770388 50770562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50770852 50770992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50771332 50771468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50772301 50772468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50772949 50773095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50776949 50777139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50778765 50778804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50792712 50792881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50806737 50806818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50821874 50822056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4134 nt):
ATGGATGAGGTGGAGCAGGACCAGCATGAGGCCCGACTCAAGGAGCTGTTTGACAGTTTTGACACGACGG
GCACAGGGTCCCTGGGGCAGGAGGAACTCACCGACCTTTGCCACATGTTGAGCTTGGAGGAGGTGGCCCC
AGTGCTGCAGCAGACATTACTTCAGGACAACCTCTTGGGCAGGGTACATTTTGACCAATTTAAAGAAGCA
TTAATACTCATCTTGTCCAGAACTCTGTCAAATGAAGAACACTTTCAAGAACCAGACTGCTCACTAGAAG
CTCAGCCCAAATATGTTAGAGGTGGGAAGCGTTACGGACGAAGGTCCTTGCCCGAGTTCCAAGAGTCCGT
GGAGGAGTTTCCTGAAGTGACGGTGATTGAGCCACTGGATGAAGAAGCGCGGCCTTCACACATCCCAGCC
GGTGACTGCAGTGAGCACTGGAAGACGCAACGCAGTGAGGAGTATGAAGCGGAAGGCCAGTTAAGGTTTT
GGAACCCAGATGACTTGAATGCTTCACAGAGTGGATCTTCCCCTCCCCAAGACTGGATAGAAGAGAAACT
GCAAGAAGTTTGTGAAGATTTGGGGATCACCCGTGATGGTCACCTGAACCGGAAGAAGCTGGTCTCCATC
TGTGAGCAGTATGGTTTACAGAATGTGGATGGAGAGATGCTCGAGGAAGTATTCCATAATCTTGATCCTG
ACGGTACAATGAGTGTAGAAGATTTTTTCTATGGTTTGTTTAAAAATGGAAAATCTCTTACACCATCAGC
ATCTACTCCATATAGACAACTAAAAAGGCACCTTTCCATGCAGTCTTTCGATGAGAGTGGACGACGTACC
ACAACCTCATCAGCAATGACAAGTACCATTGGCTTTCGGGTCTTCTCCTGCCTGGATGATGGGATGGGCC
ATGCATCTGTGGAGAGAATACTGGACACCTGGCAGGAAGAGGGCATTGAGAACAGCCAGGAGATCCTGAA
GGCCTTGGATTTCAGCCTCGATGGAAACATCAATTTGACAGAATTAACACTGGCCCTTGAAAATGAACTT
TTGGTTACCAAGAACAGCATTCACCAGGCGGCTCTGGCCAGCTTTAAGGCTGAAATCCGGCATTTGTTGG
AACGAGTTGATCAGGTGGTCAGAGAAAAAGAGAAGCTACGGTCAGATCTGGACAAGGCCGAGAAGCTCAA
GTCTTTAATGGCCTCGGAGGTGGATGATCACCATGCGGCCATAGAGCGGCGGAATGAGTACAACCTCAGG
AAACTGGATGAAGAGTACAAGGAGCGAATAGCAGCCTTAAAAAATGAACTCCGAAAAGAGAGAGAGCAGA
TCCTGCAGCAGGCAGGCAAGCAGCGTTTAGAACTTGAACAGGAAATTGAAAAGGCAAAAACAGAAGAGAA
CTATATCCGGGACCGCCTTGCCCTCTCTTTAAAGGAAAACAGTCGTCTGGAAAATGAGCTTCTAGAAAAT
GCAGAGAAGTTGGCAGAATATGAGAATCTGACAAACAAACTTCAGAGAAATTTGGAAAATGTGTTAGCAG
AAAAGTTTGGTGACCTCGATCCTAGCAGTGCTGAGTTCTTCCTGCAAGAAGAGAGACTGACACAGATGAG
AAATGAATATGAGCGGCAGTGCAGGGTACTACAAGACCAAGTAGATGAACTCCAGTCTGAGCTGGAAGAA
TATCGTGCACAAGGCAGAGTGCTCAGGCTTCCGTTGAAGAACTCACCGTCAGAAGAAGTTGAGGCTAACA
GCGGTGGCATTGAGCCCGAACACGGGCTCGGTTCTGAAGAATGCAATCCATTGAATATGAGCATTGAGGC
AGAGCTGGTCATTGAACAGATGAAAGAACAACATCACAGGGACATATGTTGCCTCAGACTGGAGCTCGAA
GATAAAGTGCGCCATTATGAAAAGCAGCTGGACGAAACCGTGGTCAGCTGCAAGAAGGCACAGGAGAACA
TGAAGCAAAGGCATGAGAACGAAACGCACACCTTAGAAAAACAAATAAGTGACCTTAAAAATGAAATTGC
TGAACTTCAGGGGCAAGCAGCAGTGCTCAAGGAGGCACATCATGAGGCCACTTGCAGGCATGAGGAGGAG
AAAAAACAACTGCAAGTGAAGCTTGAGGAGGAAAAGACTCACCTGCAGGAGAAGCTGAGGCTGCAACATG
AGATGGAGCTCAAGGCTAGACTGACACAGGCTCAAGCAAGCTTTGAGCGGGAGAGGGAAGGCCTTCAGAG
TAGCGCCTGGACAGAAGAGAAGGTGAGAGGCTTGACTCAGGAACTAGAGCAGTTTCACCAGGAGCAGCTG
ACAAGCCTGGTGGAGAAACACACTCTTGAGAAAGAGGAGTTAAGAAAAGAGCTCTTGGAAAAGCACCAAA
GGGAGCTTCAGGAGGGAAGATATGAATCTGAAAAGCTTCAACAGGAAAATTCTATTTTGAGAAATGAAAT
TACTACTTTAAATGAAGAAGATAGCATTTCTAACCTGAAATTAGGGACATTAAATGGATCTCAGGAAGAA
ATGTGGCAAAAAACGGAAACTGTAAAACAAGAAAATGCTGCAGTTCAGAAGATGGTTGAAAATTTAAAGA
AACAGATTTCAGAATTAAAAATCAAAAACCAACAATTGGATTTGGAAAATACAGAACTTAGCCAAAAGAA
CTCTCAAAACCAGGAAAAACTGCAAGAACTTAATCAACGTCTAACAGAAATGCTATGCCAGAAGGAAAAA
GAGCCAGGAAACAGTGCATTGGAGGAACGGGAACAAGAGAAGTTTAATCTGAAAGAAGAACTGGAACGTT
GTAAAGTGCAGTCCTCCACTTTAGTGTCTTCTCTGGAGGCGGAGCTCTCTGAAGTTAAAATACAGACCCA
TATTGTGCAACAGGAAAACCACCTTCTCAAAGATGAACTGGAGAAAATGAAACAGCTGCACAGATGTCCC
GATCTCTCTGACTTCCAGCAAAAAATCTCTAGTGTTCTAAGCTACAACGAAAAACTGCTGAAAGAAAAGG
AAGCTCTGAGTGAGGAATTAAATAGCTGTGTCGATAAGTTGGCAAAATCAAGTCTTTTAGAGCATAGAAT
TGCGACGATGAAGCAGGAACAGAAATCCTGGGAACATCAGAGTGCGAGCTTAAAGTCACAGCTGGTGGCT
TCTCAGGAAAAGGTTCAGAATTTAGAAGACACCGTGCAGAATGTAAACCTGCAAATGTCCCGGATGAAAT
CTGACCTACGAGTGACTCAGCAGGAAAAGGAGGCTTTAAAACAAGAAGTGATGTCTTTACATAAGCAACT
TCAGAATGCTGGTGGCAAGAGCTGGGCCCCAGAGATAGCTACTCATCCATCAGGGCTCCATAACCAGCAG
AAAAGGCTGTCCTGGGACAAGTTGGATCATCTGATGAATGAGGAACAGCAGCTGCTTTGGCAAGAGAATG
AGAGGCTCCAGACCATGGTACAGAACACCAAAGCCGAACTCACGCACTCCCGGGAGAAGGTCCGTCAGTT
GGAATCCAATCTTCTTCCCAAGCACCAAAAACATCTAAACCCATCAGGTACCATGAATCCCACAGAGCAA
GAAAAATTGAGCTTAAAGAGAGAGTGTGATCAGTTTCAGAAAGAACAATCTCCTGCTAACAGGAAGGTCA
GTCAGATGAATTCCCTTGAACAAGAATTAGAAACAATTCATTTGGAAAATGAAGGCCTGAAAAAGAAACA
AGTAAAACTGGATGAGCAGCTCATGGAGATGCAGCACCTGAGGTCCACTGCGACGCCTAGCCCGTCCCCT
CATGCTTGGGATTTGCAGCTGCTCCAGCAGCAAGCCTGTCCGATGGTGCCCAGGGAGCAGTTTCTGCAGC
TTCAACGCCAGCTGCTGCAGGCAGAAAGGATAAACCAGCACCTGCAGGAGGAACTTGAAAACAGGACCTC
CGAAACCAACACACCACAGGGAAACCAGGAACAACTGGTAACTGTCATGGAGGAACGAATGATAGAAGTT
GAACAGAAACTGAAACTAGTGAAAAGGCTTCTTCAAGAGAAAGTGAATCAGCTCAAAGAACAAGTGAGCC
TACCCGGTCATCTCTGTTCACCCACCTCACATTCCAGCTTTAACTCCAGTTTTACATCCCTTTATTGCCA
TTAA

Translation (1377 aa):
MDEVEQDQHEARLKELFDSFDTTGTGSLGQEELTDLCHMLSLEEVAPVLQQTLLQDNLLGRVHFDQFKEA
LILILSRTLSNEEHFQEPDCSLEAQPKYVRGGKRYGRRSLPEFQESVEEFPEVTVIEPLDEEARPSHIPA
GDCSEHWKTQRSEEYEAEGQLRFWNPDDLNASQSGSSPPQDWIEEKLQEVCEDLGITRDGHLNRKKLVSI
CEQYGLQNVDGEMLEEVFHNLDPDGTMSVEDFFYGLFKNGKSLTPSASTPYRQLKRHLSMQSFDESGRRT
TTSSAMTSTIGFRVFSCLDDGMGHASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENEL
LVTKNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLR
KLDEEYKERIAALKNELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLEN
AEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEE
YRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELE
DKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEE
KKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQL
TSLVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEE
MWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEK
EPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCP
DLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVA
SQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQ
KRLSWDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQ
EKLSLKRECDQFQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRSTATPSPSP
HAWDLQLLQQQACPMVPREQFLQLQRQLLQAERINQHLQEELENRTSETNTPQGNQEQLVTVMEERMIEV
EQKLKLVKRLLQEKVNQLKEQVSLPGHLCSPTSHSSFNSSFTSLYCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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