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Report for CCDS73588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73588.1 Public Homo sapiens 13 SLAIN1 24 110 108 CCDS HistoryNCBI Gene:122060Re-query CCDS DB by CCDS ID:73588.1Re-query CCDS DB by GeneID:122060See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73588.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418532.6 ENSP00000400921.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000418532.6Link to Ensembl Protein Viewer:ENSP00000400921.2Re-query CCDS DB by Nucleotide ID:ENST00000418532Re-query CCDS DB by Protein ID:ENSP00000400921
Original member Current member NCBI NM_001242868.2 NP_001229797.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001242868.2Link to Protein Sequence:NP_001229797.1Re-query CCDS DB by Nucleotide ID:NM_001242868Re-query CCDS DB by Protein ID:NP_001229797Link to BLAST:NP_001229797.1

Chromosomal Locations for CCDS 73588.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77697914 77698539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77719532 77719671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77744283 77744432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77746514 77746855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77753203 77753358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77760828 77761110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77763145 77763220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGATGGCGGAGCAGGTGAAATGCGCCTCGGCAGGGGTCAGCTCTGGAGCGGGCTCCGGGCCGGTGGTGA
ACGCGGAGCTGGAGGTGAAGAAGCTGCAGGAGCTGGTGCGCAAGCTGGAGAAGCAGAACGAGCAGCTGCG
GAGTCGAGCGGCCAGCGCGGCCGCCGCCCCGCACCTGCTGCTGCTGCCGCCGCCGCCGCCCGCCGCGCCG
CCCCCCGCTGGCCTGCAGCCTTTGGGTCCTCGGAGCCCCCCGGCCGCCACGGCCACCGCCGCGGCCTCAG
GGGGCCTGGGGCTCGGGCTGGCGCTGGGCGCGGGGGGCGGTGGCGGCAGCGGTAGTGGCAGCGGCGGTGG
CTCCAGCCCCGCGTTCCCGGGCACCTTCTGCCTGCCTAGCCCCGCGCCCTCCCTGCTTTGCAGCCTGGCG
CAGCCACCCGAGGCGCCCTTCGTCTACTTCAAGCCGGCAGCAGGCTTCTTCGGCGCGGGCGGTGGCGGGC
CGGAGCCGGGGGGCGCGGGGACGCCGCCAGGGGCAGCTGCAGCGCCGCCCTCGCCGCCCCCCACGCTGCT
GGACGAGGTGGAATTGCTGGATCTGGAGAGCGTAGCCGCCTGGCGGGACGAGGACGACTACACCTGGTTA
TACATTGGCTCTTCAAAGACGTTCACCTCATCAGAGAAATCCCTGACTCCTTTGCAGTGGTGTAGACATG
TCCTAGATAACCCAACTCCTGAGATGGAAGCAGCGAGACGTTCCCTGTGCTTTAGACTGGAGCAAGGTTA
CACTTCCAGGGGCTCCCCACTCAGTCCCCAGTCATCTATCGACAGTGAGCTGAGTACTTCAGAATTGGAG
GATGATTCTATCTCCATGGGATATAAATTACAGGACCTCACTGATGTTCAGATCATGGCTCGTCTGCAAG
AAGAAAGTCTCAGGCAAGATTATGCTTCTACTTCAGCATCTGTATCAAGACATAGTTCCAGTGTGTCATT
GAGTTCAGGAAAAAAAGGGACATGTAGTGATCAAGAATATGACCAATACAGTCTGGAGGATGAAGAGGAA
TTTGATCATTTGCCACCACCTCAGCCTCGTCTTCCAAGATGTTCCCCTTTCCAAAGAGGAATTCCCCATT
CACAGACTTTCTCCAGCATTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTTCAAATAATTA
CCAGCAGCAACAGTATTATTCACCTCAAGCCCAAACTCCAGATCAGCAACCAAATAGGACCAATGGAGAT
AAGCTCCGAAGAAGTATGCCTAACCTAGCCCGGATGCCAAGTACAACTGCCATTAGTAGCAACATTAGTT
CTCCGGTCACCGTGCGAAATAGTCAGAGTTTTGACTCAAGCTTGCATGGAGCTGGAAATGGAATTTCAAG
AATACAATCTTGTATTCCATCACCGGGACAGCTTCAACACAGGGTCCACAGCGTGGGGCATTTCCCAGTG
TCTATCCGACAGCCTCTTAAAGCCACAGCCTATGTGAGTCCAACCGTTCAAGGCAGCAGTAACATGCCTT
TATCAAACGGCTTACAGCTGTATTCCAACACAGGAATCCCCACACCGAACAAAGCTGCAGCTTCTGGGAT
AATGGGTCGCAGTGCACTCCCAAGACCTTCGTTGGCAATAAATGGGAGTAACCTGCCTCGAAGCAAAATT
GCACAACCTGTTAGAAGTTTTCTTCAGCCTCCAAAGCCTCTGTCTTCACTCAGCACTCTGAGGGATGGAA
ATTGGAGAGATGGTTGCTACTAA

Translation (590 aa):
MMAEQVKCASAGVSSGAGSGPVVNAELEVKKLQELVRKLEKQNEQLRSRAASAAAAPHLLLLPPPPPAAP
PPAGLQPLGPRSPPAATATAAASGGLGLGLALGAGGGGGSGSGSGGGSSPAFPGTFCLPSPAPSLLCSLA
QPPEAPFVYFKPAAGFFGAGGGGPEPGGAGTPPGAAAAPPSPPPTLLDEVELLDLESVAAWRDEDDYTWL
YIGSSKTFTSSEKSLTPLQWCRHVLDNPTPEMEAARRSLCFRLEQGYTSRGSPLSPQSSIDSELSTSELE
DDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEE
FDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGD
KLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPV
SIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKI
AQPVRSFLQPPKPLSSLSTLRDGNWRDGCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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