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Report for CCDS91815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91815.1 Public Homo sapiens 13 CLN5 24 110 108 CCDS HistoryNCBI Gene:1203Re-query CCDS DB by CCDS ID:91815.1Re-query CCDS DB by GeneID:1203See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91815.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000637537.2 ENSP00000489711.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637537.2Link to Ensembl Protein Viewer:ENSP00000489711.2Re-query CCDS DB by Nucleotide ID:ENST00000637537Re-query CCDS DB by Protein ID:ENSP00000489711
Original member Current member EBI ENST00000636780.2 ENSP00000489809.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636780.2Link to Ensembl Protein Viewer:ENSP00000489809.2Re-query CCDS DB by Nucleotide ID:ENST00000636780Re-query CCDS DB by Protein ID:ENSP00000489809
Original member Current member NCBI NM_001366624.2 NP_001353553.1 Accepted alive Link to Nucleotide Sequence:NM_001366624.2Link to Protein Sequence:NP_001353553.1Re-query CCDS DB by Nucleotide ID:NM_001366624Re-query CCDS DB by Protein ID:NP_001353553Link to BLAST:NP_001353553.1

Chromosomal Locations for CCDS 91815.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 76992099 76992271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76995063 76995228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76995902 76996127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76998043 76998071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGCGCAGGAGGTAGACACGGCACAGGGCGCCGAGATGCGGCGGGGCGCGGGCGCGGCTCGGGGACGCG
CTTCCTGGTGCTGGGCCCTGGCGCTGCTTTGGCTCGCGGTGGTTCCGGGCTGGTCCCGGGTCTCGGGCAT
CCCCTCCCGGCGCCACTGGCCGGTGCCCTACAAGCGCTTTGACTTCCGTCCAAAACCTGATCCTTATTGT
CAAGCTAAGTATACTTTCTGTCCAACTGGCTCACCTATCCCAGTTATGGAGGGTGATGATGACATTGAAG
TTTTTCGATTACAAGCCCCAGTATGGGAATTTAAATATGGAGACCTCCTGGGACACTTGAAAATTATGCA
TGATGCCATTGGATTCAGAAGTACATTAACTGGCAAGAACTACACAATGGAATGGTATGAACTTTTCCAA
CTTGGCAACTGTACATTTCCCCATCTCCGACCTGAAATGGATGCCCCTTTCTGGTGTAATCAAGGCGCTG
CCTGCTTTTTTGAGGGAATTGATGATGTTCACTGGAAGGAAAATGGGACATTAGTTCAAGTAGCAACTAT
ATCAGATGGAGAAACTGAGGCACAGAGAGGTTAA

Translation (197 aa):
MAQEVDTAQGAEMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYC
QAKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNYTMEWYELFQ
LGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISDGETEAQRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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