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Report for CCDS8404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8404.1 Public Homo sapiens 11 UPK2 24 110 108 CCDS HistoryNCBI Gene:7379Re-query CCDS DB by CCDS ID:8404.1Re-query CCDS DB by GeneID:7379See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264031.3 ENSP00000264031.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264031.3Link to Ensembl Protein Viewer:ENSP00000264031.2Re-query CCDS DB by Nucleotide ID:ENST00000264031Re-query CCDS DB by Protein ID:ENSP00000264031
Original member Current member NCBI NM_006760.4 NP_006751.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006760.4Link to Protein Sequence:NP_006751.1Re-query CCDS DB by Nucleotide ID:NM_006760Re-query CCDS DB by Protein ID:NP_006751Link to BLAST:NP_006751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006751.1 184 O00526 184 100% 0 0

Chromosomal Locations for CCDS 8404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118956351 118956426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118956883 118957014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118957208 118957346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118957598 118957668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118958097 118958233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGCACCCCTGCTGCCCATCCGGACCTTGCCCTTGATCCTGATTCTGCTGGCTCTGCTGTCCCCAGGGG
CT
GCAGACTTCAACATCTCAAGCCTCTCTGGTCTGCTGTCCCCGGCGCTAACGGAGAGCCTGCTGGTTGC
C
TTGCCCCCCTGTCACCTCACAGGAGGCAATGCCACACTGATGGTCCGGAGAGCCAATGACAGCAAAGTG
GTG
ACGTCCAGCTTTGTGGTGCCTCCGTGCCGTGGGCGCAGGGAACTGGTGAGTGTGGTGGACAGTGGTG
CT
GGCTTCACAGTCACTCGGCTCAGTGCATACCAGGTGACAAACCTCGTGCCAGGAACCAAATTCTACAT
T
TCCTACCTAGTGAAGAAGGGGACAGCCACTGAGTCCAGCAGAGAGATCCCAATGTCCACACTCCCTCGA
AGG
AACATGGAATCCATTGGGCTGGGTATGGCCCGCACAGGGGGCATGGTGGTCATCACGGTGCTGCTCT
CT
GTCGCCATGTTCCTGCTGGTGCTGGGCTTCATCATTGCCCTGGCACTGGGCTCCCGCAAGTAA


Translation (184 aa):
MAPLLPIRTLPLILILLALLSPGAADFNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKV
V
TSSFVVPPCRGRRELVSVVDSGAGFTVTRLSAYQVTNLVPGTKF
YISYLVKKGTATESSREIPMSTLPR
R
NMESIGLGMARTGGMVVITVLLSVAMFLLVLGFIIALALGSRK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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