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Report for CCDS41716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41716.1 Public Homo sapiens 11 BCO2 24 110 108 CCDS HistoryNCBI Gene:83875Re-query CCDS DB by CCDS ID:41716.1Re-query CCDS DB by GeneID:83875See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41716.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438022.5 ENSP00000414843.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438022.5Link to Ensembl Protein Viewer:ENSP00000414843.1Re-query CCDS DB by Nucleotide ID:ENST00000438022Re-query CCDS DB by Protein ID:ENSP00000414843
Original member Current member EBI ENST00000531169.5 ENSP00000437053.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531169.5Link to Ensembl Protein Viewer:ENSP00000437053.1Re-query CCDS DB by Nucleotide ID:ENST00000531169Re-query CCDS DB by Protein ID:ENSP00000437053
Original member Current member NCBI NM_001037290.4 NP_001032367.3 Accepted alive Link to Nucleotide Sequence:NM_001037290.4Link to Protein Sequence:NP_001032367.3Re-query CCDS DB by Nucleotide ID:NM_001037290Re-query CCDS DB by Protein ID:NP_001032367Link to BLAST:NP_001032367.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032367.3 545 Q9BYV7-2 545 100% 0 0

Chromosomal Locations for CCDS 41716.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 112179292 112179482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112193474 112193697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112193879 112193994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112194653 112194755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112199699 112199827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112200613 112200773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112202023 112202190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112213724 112213861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112214762 112214944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112216220 112216330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112217761 112217874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGGAAATACTCCTCAGAAAAAAGCCGTCTTTGGGCAGTGTCGGGGTCTGCCATGTGTTGCACCGCTGC
TGACCACAGTGGAAGAGGCTCCACGGGGCATCTCTGCTCGAGTCTGGGGACATTTTCCTAAGTGGCTCAA
TGGCTCTCTACTTCGAATTGGACCTGGGAAATTCGAGTTTGGGAAGGATAAGTACAATCATTGGTTTGAT
GGGATGGCGCTGCTTCACCAGTTCAGAATGGCAAAGGGCACAGTGACATACAGGAGCAAGTTTCTACAGA
GTGATACATATAAGGCCAACAGTGCTAAAAACCGAATTGTGATCTCAGAATTTGGCACACTGGCTCTCCC
GGATCCATGCAAGAATGTTTTTGAACGTTTCATGTCCAGGTTTGAGCTGCCTGGTAAAGCTGCAGCCATG
ACTGACAATACTAATGTCAACTATGTGCGGTACAAGGGTGATTACTACCTCTGCACTGAGACCAACTTTA
TGAATAAAGTGGACATTGAAACTCTGGAAAAAACAGAAAAGGTAGATTGGAGCAAATTTATTGCTGTGAA
TGGAGCAACTGCACATCCTCATTATGACCTGGATGGAACAGCATACAATATGGGGAACTCCTTTGGGCCA
TATGGTTTCTCCTATAAGGTTATTCGGGTTCCTCCAGAGAAGGTGGACCTTGGGGAGACAATCCATGGAG
TCCAGGTGATATGTTCTATTGCTTCTACAGAGAAAGGGAAACCTTCTTACTACCATAGCTTTGGAATGAC
AAGGAACTATATAATTTTCATTGAACAACCTCTAAAGATGAACCTGTGGAAAATTGCCACTTCTAAAATT
CGGGGAAAGGCCTTTTCAGATGGGATAAGCTGGGAACCCCAGTGTAATACGCGGTTTCATGTGGTGGAAA
AACGCACTGGACAGCTCCTTCCAGGGAGATACTACAGCAAACCTTTTGTTACATTTCATCAAATCAATGC
CTTTGAGGACCAGGGCTGTGTTATAATTGATTTGTGCTGTCAAGATAATGGAAGAACCCTAGAAGTTTAC
CAGTTACAGAATCTCAGGAAGGCTGGGGAAGGGCTTGATCAGGTCCATAATTCAGCAGCCAAATCTTTCC
CTCGAAGGTTTGTTTTGCCTTTAAATGTCAGTTTGAATGCCCCTGAGGGAGACAACCTGAGTCCATTGTC
CTATACTTCAGCCAGTGCTGTGAAACAGGCTGATGGAACGATCTGGTGCTCTCATGAAAATCTACATCAG
GAGGACCTAGAAAAGGAAGGAGGCATTGAATTTCCTCAGATCTACTATGATCGATTCAGTGGCAAAAAGT
ATCATTTCTTTTATGGCTGTGGCTTTCGGCATTTAGTGGGGGATTCTCTGATCAAGGTTGATGTGGTGAA
TAAGACACTGAAGGTTTGGAGAGAAGATGGCTTTTATCCCTCAGAACCTGTTTTTGTTCCAGCACCAGGA
ACCAATGAAGAAGATGGTGGGGTTATTCTTTCTGTGGTGATCACTCCCAACCAGAATGAAAGCAATTTTA
TCCTAGTTTTGGATGCCAAGAACTTTGAAGAGCTGGGCCGAGCAGAGGTACCTGTGCAGATGCCTTATGG
GTTCCATGGTACCTTCATACCCATCTGA

Translation (545 aa):
MGNTPQKKAVFGQCRGLPCVAPLLTTVEEAPRGISARVWGHFPKWLNGSLLRIGPGKFEFGKDKYNHWFD
GMALLHQFRMAKGTVTYRSKFLQSDTYKANSAKNRIVISEFGTLALPDPCKNVFERFMSRFELPGKAAAM
TDNTNVNYVRYKGDYYLCTETNFMNKVDIETLEKTEKVDWSKFIAVNGATAHPHYDLDGTAYNMGNSFGP
YGFSYKVIRVPPEKVDLGETIHGVQVICSIASTEKGKPSYYHSFGMTRNYIIFIEQPLKMNLWKIATSKI
RGKAFSDGISWEPQCNTRFHVVEKRTGQLLPGRYYSKPFVTFHQINAFEDQGCVIIDLCCQDNGRTLEVY
QLQNLRKAGEGLDQVHNSAAKSFPRRFVLPLNVSLNAPEGDNLSPLSYTSASAVKQADGTIWCSHENLHQ
EDLEKEGGIEFPQIYYDRFSGKKYHFFYGCGFRHLVGDSLIKVDVVNKTLKVWREDGFYPSEPVFVPAPG
TNEEDGGVILSVVITPNQNESNFILVLDAKNFEELGRAEVPVQMPYGFHGTFIPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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