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Report for CCDS8355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8355.1 Public Homo sapiens 11 PIH1D2 24 110 108 CCDS HistoryNCBI Gene:120379Re-query CCDS DB by CCDS ID:8355.1Re-query CCDS DB by GeneID:120379See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8355.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280350.10 ENSP00000280350.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280350.10Link to Ensembl Protein Viewer:ENSP00000280350.4Re-query CCDS DB by Nucleotide ID:ENST00000280350Re-query CCDS DB by Protein ID:ENSP00000280350
Original member Current member EBI ENST00000532211.5 ENSP00000431841.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532211.5Link to Ensembl Protein Viewer:ENSP00000431841.1Re-query CCDS DB by Nucleotide ID:ENST00000532211Re-query CCDS DB by Protein ID:ENSP00000431841
Original member Current member EBI ENST00000676994.1 ENSP00000503801.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676994.1Link to Ensembl Protein Viewer:ENSP00000503801.1Re-query CCDS DB by Nucleotide ID:ENST00000676994Re-query CCDS DB by Protein ID:ENSP00000503801
Original member Current member NCBI NM_138789.4 NP_620144.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138789.4Link to Protein Sequence:NP_620144.1Re-query CCDS DB by Nucleotide ID:NM_138789Re-query CCDS DB by Protein ID:NP_620144Link to BLAST:NP_620144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620144.1 315 Q8WWB5-1 315 100% 0 0

Chromosomal Locations for CCDS 8355.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 112067871 112068005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112070436 112070701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112071038 112071283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112071635 112071758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112072998 112073174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGAGACATCCTCAAAAGGTCTGCTTACCCAAGTTACTCAGTTTTGGAACCTCCTAGATGATCTAGCTC
AGAGTGACCCTGAGGGCTATGAGAAGTTTATTCAGCAGCAGCTGAAAGAAGGGAAACAGCTCTGTGCTGC
CCCAGAACCACAGCTTTGTCTACAGACCAGGATTCTGAAACCAAAAGAAAAAATACTTTTTATCAACCTG
TGTCAGTGGACAAGGATCCCAGCTCCCCAATCAACCACTCATCCAGTACCTCTAACTGTTGGCAAACCAG
AAGATACAACTGAGATATCAGATGCTTACACAGTCATTGATGTTGCCTACAATCCTGATGTTCTTCATGC
AGCAGAAAAGGACCAAGTGAAAAAAAATCAGTTAATTCAGATGGCCATGAAATGCATTGAGGAGAAATTC
CAGTTCACCCTCTCACACTCTTACCATATTACCAAATTTAGAATAAAAGGAAGCATTCAAAGAATGAAAC
AAAATCTGATGGGAATCCAAACTGATTCCATAGATTTAAGAGAAAAAATGAGAAGGGAACTAACTCTTGG
ACAGATACGAAGCAGTACTATGAGCAATCCAGATCACTTTCCTCAACTGTTACTGCCAAAAGACCAAGTT
TCAGGCAAAGCAGTGTGTCTGATAGAAGAGATTTCCAGTACTGAAATCCAGGTGGAGATGAAGATGCCAG
CCTATGAACTAAAAATTGTGCATGATCACAGTGAGAAACCTCTGAAAATTGAGTTGAAAGTTGAATTACC
TGGTATTAATTCTGTCTCTCTCTGTGACCTTAGTGTTTCTGAGGATGATTTATTGATTGAAGTATCTGAG
AAGTACAGATTACATCTGAATCTTCCAAAACTTATTGATACTGAAATGACCACAGCAAAATTTATCAAAG
AAAAATCCACGCTAATCATCACAATGCCTTTGGTGTGA

Translation (315 aa):
METSSKGLLTQVTQFWNLLDDLAQSDPEGYEKFIQQQLKEGKQLCAAPEPQLCLQTRILKPKEKILFINL
CQWTRIPAPQSTTHPVPLTVGKPEDTTEISDAYTVIDVAYNPDVLHAAEKDQVKKNQLIQMAMKCIEEKF
QFTLSHSYHITKFRIKGSIQRMKQNLMGIQTDSIDLREKMRRELTLGQIRSSTMSNPDHFPQLLLPKDQV
SGKAVCLIEEISSTEIQVEMKMPAYELKIVHDHSEKPLKIELKVELPGINSVSLCDLSVSEDDLLIEVSE
KYRLHLNLPKLIDTEMTTAKFIKEKSTLIITMPLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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