NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8190.1 Public Homo sapiens 11 MYEOV 24 110 108 CCDS HistoryNCBI Gene:26579Re-query CCDS DB by CCDS ID:8190.1Re-query CCDS DB by GeneID:26579See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308946.3 ENSP00000308330.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308946.3Link to Ensembl Protein Viewer:ENSP00000308330.3Re-query CCDS DB by Nucleotide ID:ENST00000308946Re-query CCDS DB by Protein ID:ENSP00000308330
Original member Current member EBI ENST00000441339.3 ENSP00000412482.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000441339.3Link to Ensembl Protein Viewer:ENSP00000412482.2Re-query CCDS DB by Nucleotide ID:ENST00000441339Re-query CCDS DB by Protein ID:ENSP00000412482
Original member Current member NCBI NM_001293291.2 NP_001280220.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001293291.2Link to Protein Sequence:NP_001280220.1Re-query CCDS DB by Nucleotide ID:NM_001293291Re-query CCDS DB by Protein ID:NP_001280220Link to BLAST:NP_001280220.1
Original member Current member NCBI NM_138768.4 NP_620123.2 Accepted alive Link to Nucleotide Sequence:NM_138768.4Link to Protein Sequence:NP_620123.2Re-query CCDS DB by Nucleotide ID:NM_138768Re-query CCDS DB by Protein ID:NP_620123Link to BLAST:NP_620123.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280220.1 313 Q96EZ4 313 100% 0 0
NP_620123.2 313 Q96EZ4 313 100% 0 0

Chromosomal Locations for CCDS 8190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69295355 69295495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69295592 69296392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCCCTCAGAATCTGCGTCACATACACCCCAGCTCTCCCGATAGGTCTCTGCACTCGCTGTTGCCTCT
GCCTGGAACAGTCTCCCTCCTGGTGTCATTGTCTCCGTGGTGTGTCCTTCCTGACCTTCCACCTCCACCA
GTCTGTCCCCCTTGGGGACAGGGACTCGTTGCTCATGTTCACCCGGCAGGCTGGACACTTCGTGGAGGGC
TCCAAAGCCGGCAGATCCCGGGGCCGCCTCTGTCTCTCCCAGGCCCTGCGTGTTGCGGTGAGAGGAGCAT
TTGTGTCTCTGTGGTTTGCTGCTGGAGCTGGTGACCGGGAGAGAAACAAGGGAGACAAGGGTGCCCAGAC
AGGTGCGGGGCTCAGCCAGGAGGCAGAAGACGTGGACGTGTCCCGGGCCAGGAGGGTCACAGATGCACCA
CAAGGCACTCTGTGTGGCACTGGGAACAGGAATTCTGGGAGTCAGTCTGCAAGGGTGGTGGGCGTTGCTC
ACCTGGGAGAAGCCTTTAGAGTGGGCGTTGAGCAGGCCATTAGCTCGTGCCCTGAGGAGGTGCATGGGCG
GCATGGGCTCTCCATGGAAATTATGTGGGCGCGAATGGATGTGGCTCTGCGCTCACCTGGGCGAGGACTT
CTGGCCGGTGCCGGGGCACTCTGCATGACCCTGGCAGAATCGAGCTGCCCTGACTATGAAAGGGGAAGAA
GAGCATGCCTGACCCTCCACCGGCACCCCACCCCTCACTGCTCCACCTGGGGCCTGCCTCTGCGGGTGGC
TGGGTCCTGGCTGACTGTTGTGACTGTTGAGGCCCTGGGGGGGTGGCGCATGGGAGTTAGGAGGACTGGC
CAGGTGGGGCCCACTATGCACCCACCCCCAGTGTCAGGTGCTTCTCCTCTCCTCCTCCACCACCTCCTCC
TCCTCCTCCTCATCATCATCCTCACTTGTTGA

Translation (313 aa):
MALRICVTYTPALPIGLCTRCCLCLEQSPSWCHCLRGVSFLTFHLHQSVPLGDRDSLLMFTRQAGHFVEG
SKAGRSRGRLCLSQALRVAVRGAFVSLWFAAGAGDRERNKGDKGAQTGAGLSQEAEDVDVSRARRVTDAP
QGTLCGTGNRNSGSQSARVVGVAHLGEAFRVGVEQAISSCPEEVHGRHGLSMEIMWARMDVALRSPGRGL
LAGAGALCMTLAESSCPDYERGRRACLTLHRHPTPHCSTWGLPLRVAGSWLTVVTVEALGGWRMGVRRTG
QVGPTMHPPPVSGASPLLLHHLLLLLLIIILTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH