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Report for CCDS53653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53653.1 Public Homo sapiens 11 TRPT1 24 110 108 CCDS HistoryNCBI Gene:83707Re-query CCDS DB by CCDS ID:53653.1Re-query CCDS DB by GeneID:83707See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53653.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541278.5 ENSP00000438683.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541278.5Link to Ensembl Protein Viewer:ENSP00000438683.1Re-query CCDS DB by Nucleotide ID:ENST00000541278Re-query CCDS DB by Protein ID:ENSP00000438683
Original member Current member NCBI NM_001160392.2 NP_001153864.1 Accepted alive Link to Nucleotide Sequence:NM_001160392.2Link to Protein Sequence:NP_001153864.1Re-query CCDS DB by Nucleotide ID:NM_001160392Re-query CCDS DB by Protein ID:NP_001153864Link to BLAST:NP_001153864.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153864.1 216 Q86TN4-3 216 100% 0 0

Chromosomal Locations for CCDS 53653.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64223876 64223967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224285 64224341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224543 64224717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224801 64224970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64225499 64225580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64225786 64225860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGAACTTCTCTGGAGGAGGGAGGCAGGAAGCAGCAGGGTCCAGGGGTAGAAGGGCTCCCAGACCCCGAG
AACAGGACCGAGACGTGCAGCTGTCCAAGGCTCTGTCCTATGCCCTGCGCCATGGGGCCTTGAAGCTGGG
GCTTCCCATGGGAGCTGATGGCTTCGTGCCCCTGGGCACCCTCCTGCAGTTGCCCCAGTTCCGCGGCTTC
TCTGCTGAAGATGTGCAGCGCGTGGTGGACACCAATAGGAAGCAGCGGTTCGCCCTGCAGCTGGGGGATC
CCAGCACTGGCCTTCTCATCCGGGCCAACCAGGGCCATTCCCTGCAGGTACCTAAGTTGGAGCTGATGCC
CCTGGAGACACCGCAGGCCCTGCCCCCGATGCTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATC
CTACTCAAAGGCCTGTCCTGCCAGGGAAGGACGCACATTCACCTGGCCCCAGGACTGCCTGGAGACCCCG
GTATCATCAGTGGCATGCGGTCCCATTGTGAAATAGCTGTGTTCATCGATGGACCCCTGGCTCTGGCAGG
AAAGCCCCTTTCCTTGGCTGGTGATGAAGAGACAGAGTGTCAGAGTAGCCCCAAGCACAGCTCCAGAGAA
AGGAGGAGGATCCAACAATAA

Translation (216 aa):
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGTLLQLPQFRGF
SAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLETPQALPPMLVHGTFWKHWPSI
LLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFIDGPLALAGKPLSLAGDEETECQSSPKHSSRE
RRRIQQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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