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Report for CCDS44639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44639.1 Public Homo sapiens 11 TRPT1 24 110 108 CCDS HistoryNCBI Gene:83707Re-query CCDS DB by CCDS ID:44639.1Re-query CCDS DB by GeneID:83707See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44639.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394547.7 ENSP00000378051.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394547.7Link to Ensembl Protein Viewer:ENSP00000378051.3Re-query CCDS DB by Nucleotide ID:ENST00000394547Re-query CCDS DB by Protein ID:ENSP00000378051
Original member Current member NCBI NM_031472.4 NP_113660.1 Accepted alive Link to Nucleotide Sequence:NM_031472.4Link to Protein Sequence:NP_113660.1Re-query CCDS DB by Nucleotide ID:NM_031472Re-query CCDS DB by Protein ID:NP_113660Link to BLAST:NP_113660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113660.1 204 Q86TN4-2 204 100% 0 0

Chromosomal Locations for CCDS 44639.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64223876 64223967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224100 64224210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224285 64224341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224543 64224717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224801 64224970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64225499 64225508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGGAGCTGATGGCTTCGTGCCCCTGGGCACCCTCCTGCAGTTGCCCCAGTTCCGCGGCTTCTCTGCTG
AAGATGTGCAGCGCGTGGTGGACACCAATAGGAAGCAGCGGTTCGCCCTGCAGCTGGGGGATCCCAGCAC
TGGCCTTCTCATCCGGGCCAACCAGGGCCATTCCCTGCAGGTACCTAAGTTGGAGCTGATGCCCCTGGAG
ACACCGCAGGCCCTGCCCCCGATGCTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATCCTACTCA
AAGGCCTGTCCTGCCAGGGAAGGACGCACATTCACCTGGCCCCAGGACTGCCTGGAGACCCCGGTATCAT
CAGTGGCATGCGGTCCCATTGTGAAATAGCTGTGTTCATCGATGGACCCCTGGCTCTGGCAGATGGAATA
CCCTTCTTCCGCTCTGCCAATGGGGTGATTCTGACTCCAGGGAATACTGATGGCTTCCTCCTTCCCAAGT
ACTTCAAGGAGGCCCTGCAGCTACGCCCTACCCGAAAGCCCCTTTCCTTGGCTGGTGATGAAGAGACAGA
GTGTCAGAGTAGCCCCAAGCACAGCTCCAGAGAAAGGAGGAGGATCCAACAATAA

Translation (204 aa):
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLE
TPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFIDGPLALADGI
PFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQSSPKHSSRERRRIQQ


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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