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Report for CCDS31441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31441.1 Public Homo sapiens 11 SPTY2D1 24 110 108 CCDS HistoryNCBI Gene:144108Re-query CCDS DB by CCDS ID:31441.1Re-query CCDS DB by GeneID:144108See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31441.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336349.6 ENSP00000337991.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336349.6Link to Ensembl Protein Viewer:ENSP00000337991.5Re-query CCDS DB by Nucleotide ID:ENST00000336349Re-query CCDS DB by Protein ID:ENSP00000337991
Original member Current member NCBI NM_194285.3 NP_919261.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_194285.3Link to Protein Sequence:NP_919261.2Re-query CCDS DB by Nucleotide ID:NM_194285Re-query CCDS DB by Protein ID:NP_919261Link to BLAST:NP_919261.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919261.2 685 Q68D10-1 685 100% 0 0

Chromosomal Locations for CCDS 31441.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18609861 18609954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18611477 18611554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18612314 18612488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18614563 18616098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18616875 18616989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18634198 18634257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGGACTTCAGAGAAATTCTCATGATAGCTTCCAAGGGACAAGGTGTCAACAATGTGCCGAAAAGGTATA
GTTTGGCAGTGGGGCCTCCAAAAAAAGACCCAAAAGTTAAAGGTGTCCAATCAGCAGCTGTACAAGCTTT
TCTTAAAAGGAAAGAAGAGGAGCTGAGACGAAAAGCCTTAGAGGAGAAAAGGAGAAAAGAGGAACTAGTG
AAAAAGCGAATTGAGCTCAAACATGACAAGAAAGCAAGAGCTATGGCCAAGAGGACAAAGGATAATTTCC
ATGGTTACAATGGGATTCCTATTGAGGAAAAGTCAAAGAAGAGGCAGGCAACAGAAAGCCATACCAGCCA
AGGAACCGACCGAGAGTATGAAATGGAAGAAGAGAATGAATTCCTCGAGTACAATCACGCAGAGTCAGAG
CAGGAGTATGAGGAAGAGCAAGAACCTCCCAAAGTTGAAAGCAAACCAAAGGTCCCCCTTAAAAGTGCCC
CACCACCCATGAACTTCACTGATTTACTCAGGCTGGCTGAGAAAAAGCAGTTTGAACCAGTGGAAATCAA
GGTAGTGAAGAAATCAGAAGAGCGACCTATGACCGCAGAAGAACTTAGGGAGCGAGAATTCCTTGAACGA
AAGCATAGGAGAAAAAAACTTGAGACAGATGGAAAACTACCTCCAACTGTGTCCAAAAAGGCACCCTCTC
AGAAAGAAAGTGTGGGCACAAAACTTAGCAAAGGTTCTGGAGACAGGCATCCTTCTTCCAAAGGAATGCC
CCTTCCTCATGCTGAGAAGAAATCAAGACCCAGCATGGCCAATGAGAAACACCTCGCTTTGTCTTCATCC
AAATCCATGCCAGGAGAGAGGATCAAGGCAGGATCTGGCAATAGCTCCCAACCCTCACTTCGTGAGGGCC
ACGACAAACCTGTTTTTAATGGAGCTGGAAAGCCTCATTCCAGCACCTCTTCACCAAGTGTCCCAAAGAC
TTCTGCTAGCAGGACTCAGAAATCTGCTGTTGAGCACAAAGCCAAAAAATCTCTGTCCCATCCTAGCCAT
TCCAGGCCTGGGCCCATGGTCACCCCACACAATAAGGCTAAGAGTCCAGGTGTCAGGCAGCCAGGCAGCA
GCTCTAGCTCAGCCCCTGGGCAGCCCAGCACAGGGGTTGCTCGACCCACAGTTAGTTCTGGCCCTGTGCC
TAGGCGCCAGAATGGCAGCTCCAGCTCAGGACCTGAGCGATCAATCAGTGGGTCCAAGAAGCCAACCAAT
GACTCAAATCCCTCTAGGCGGACAGTCAGTGGTACATGTGGCCCTGGACAACCTGCAAGCAGCTCAGGTG
GCCCTGGGCGACCCATCAGTGGTTCAGTTAGTTCTGCAAGACCCTTGGGCAGCTCTCGTGGCCCTGGCCG
GCCTGTGAGCAGTCCACATGAACTTCGACGACCAGTGAGTGGCTTGGGCCCCCCGGGGCGGTCTGTCAGT
GGCCCTGGGAGATCCATAAGTGGCTCAATTCCAGCTGGACGGACTGTCAGTAATTCAGTCCCAGGAAGAC
CAGTGAGCAGCTTGGGACCTGGGCAAACAGTTAGTAGCTCAGGTCCCACTATAAAGCCTAAGTGCACTGT
TGTCTCCGAAACAATTTCTTCCAAGAATATCATTAGCCGGTCCAGCAATGGACAGATGAATGGAATGAAG
CCTCCCCTATCTGGCTACAGAGCTGCCCAAGGTCCTCAAAGGCTTCCCTTCCCTACTGGTTACAAAAGGC
AGCGAGAATATGAAGAGGAAGATGACGATGATGATGAATACGACTCTGAAATGGAAGATTTTATTGAAGA
TGAAGGAGAGCCTCAGGAAGAAATATCCAAGCACATTAGAGAAATCTTTGGTTATGACCGAAAAAAATAC
AAAGATGAAAGTGATTATGCCTTACGTTACATGGAAAGTAGTTGGAAAGAGCAGCAGAAGGAAGAAGCAA
AGAGCTTAAGACTGGGTATGCAAGAGGACTTAGAGGAAATGAGACGTGAAGAAGAAGAAATGCAACGTCG
AAGGGCCAAGAAGCTGAAGAGGCGTTAG

Translation (685 aa):
MDFREILMIASKGQGVNNVPKRYSLAVGPPKKDPKVKGVQSAAVQAFLKRKEEELRRKALEEKRRKEELV
KKRIELKHDKKARAMAKRTKDNFHGYNGIPIEEKSKKRQATESHTSQGTDREYEMEEENEFLEYNHAESE
QEYEEEQEPPKVESKPKVPLKSAPPPMNFTDLLRLAEKKQFEPVEIKVVKKSEERPMTAEELREREFLER
KHRRKKLETDGKLPPTVSKKAPSQKESVGTKLSKGSGDRHPSSKGMPLPHAEKKSRPSMANEKHLALSSS
KSMPGERIKAGSGNSSQPSLREGHDKPVFNGAGKPHSSTSSPSVPKTSASRTQKSAVEHKAKKSLSHPSH
SRPGPMVTPHNKAKSPGVRQPGSSSSSAPGQPSTGVARPTVSSGPVPRRQNGSSSSGPERSISGSKKPTN
DSNPSRRTVSGTCGPGQPASSSGGPGRPISGSVSSARPLGSSRGPGRPVSSPHELRRPVSGLGPPGRSVS
GPGRSISGSIPAGRTVSNSVPGRPVSSLGPGQTVSSSGPTIKPKCTVVSETISSKNIISRSSNGQMNGMK
PPLSGYRAAQGPQRLPFPTGYKRQREYEEEDDDDDEYDSEMEDFIEDEGEPQEEISKHIREIFGYDRKKY
KDESDYALRYMESSWKEQQKEEAKSLRLGMQEDLEEMRREEEEMQRRRAKKLKRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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