NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44548.1 Public Homo sapiens 11 SAA2 24 110 108 CCDS HistoryNCBI Gene:6289Re-query CCDS DB by CCDS ID:44548.1Re-query CCDS DB by GeneID:6289See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44548.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000414546.6 ENSP00000416716.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414546.6Link to Ensembl Protein Viewer:ENSP00000416716.2Re-query CCDS DB by Nucleotide ID:ENST00000414546Re-query CCDS DB by Protein ID:ENSP00000416716
Original member Current member NCBI NM_001127380.3 NP_001120852.1 Accepted alive Link to Nucleotide Sequence:NM_001127380.3Link to Protein Sequence:NP_001120852.1Re-query CCDS DB by Nucleotide ID:NM_001127380Re-query CCDS DB by Protein ID:NP_001120852Link to BLAST:NP_001120852.1
Original member Current member NCBI NM_001385667.1 NP_001372596.1 Accepted alive Link to Nucleotide Sequence:NM_001385667.1Link to Protein Sequence:NP_001372596.1Re-query CCDS DB by Nucleotide ID:NM_001385667Re-query CCDS DB by Protein ID:NP_001372596Link to BLAST:NP_001372596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120852.1 83 P0DJI9-2 83 100% 0 0
NP_001372596.1 83 P0DJI9-2 83 100% 0 0

Chromosomal Locations for CCDS 44548.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18239948 18239969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18245910 18246048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18247921 18248011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (252 nt):
ATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCCTGAGTGTCAGCAGCCGAAGCTTCTTTTCGT
TCCTTGGCGAGGCTTTTGATGGGGCTCGGGACATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTA
CATCGGCTCAGACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACCTGGGGGTGCC
TGGGCTGCAGAAGTGATCAGTTTATTTTCAGCTGAACTGTAG

Translation (83 aa):
MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGA
WAAEVISLFSAEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH