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Report for CCDS7722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7722.1 Public Homo sapiens 11 CHID1 24 110 108 CCDS HistoryNCBI Gene:66005Re-query CCDS DB by CCDS ID:7722.1Re-query CCDS DB by GeneID:66005See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7722.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323578.13 ENSP00000325055.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323578.13Link to Ensembl Protein Viewer:ENSP00000325055.8Re-query CCDS DB by Nucleotide ID:ENST00000323578Re-query CCDS DB by Protein ID:ENSP00000325055
Original member Current member EBI ENST00000436108.6 ENSP00000388156.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436108.6Link to Ensembl Protein Viewer:ENSP00000388156.2Re-query CCDS DB by Nucleotide ID:ENST00000436108Re-query CCDS DB by Protein ID:ENSP00000388156
Original member Current member EBI ENST00000449825.5 ENSP00000391255.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449825.5Link to Ensembl Protein Viewer:ENSP00000391255.1Re-query CCDS DB by Nucleotide ID:ENST00000449825Re-query CCDS DB by Protein ID:ENSP00000391255
Original member Current member NCBI NM_001142674.2 NP_001136146.1 Accepted alive Link to Nucleotide Sequence:NM_001142674.2Link to Protein Sequence:NP_001136146.1Re-query CCDS DB by Nucleotide ID:NM_001142674Re-query CCDS DB by Protein ID:NP_001136146Link to BLAST:NP_001136146.1
Original member Current member NCBI NM_001142675.2 NP_001136147.1 Accepted alive Link to Nucleotide Sequence:NM_001142675.2Link to Protein Sequence:NP_001136147.1Re-query CCDS DB by Nucleotide ID:NM_001142675Re-query CCDS DB by Protein ID:NP_001136147Link to BLAST:NP_001136147.1
Original member Current member NCBI NM_023947.4 NP_076436.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023947.4Link to Protein Sequence:NP_076436.3Re-query CCDS DB by Nucleotide ID:NM_023947Re-query CCDS DB by Protein ID:NP_076436Link to BLAST:NP_076436.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136146.1 393 Q9BWS9-1 393 100% 0 0
NP_001136147.1 393 Q9BWS9-1 393 100% 0 0
NP_076436.3 393 Q9BWS9-1 393 100% 0 0

Chromosomal Locations for CCDS 7722.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 869858 869956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 870121 870163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 870419 870499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 883148 883303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 884068 884169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 893427 893519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 899340 899401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 900004 900110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 900936 900980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 902198 902330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 902962 903111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 904706 904816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGCGGACACTCTTCAACCTCCTCTGGCTTGCCCTGGCCTGCAGCCCTGTTCACACTACCCTGTCAAAGT
CAGATGCCAAAAAAGCCGCCTCAAAGACGCTGCTGGAGAAGAGTCAGTTTTCAGATAAGCCGGTGCAAGA
CCGGGGTTTGGTGGTGACGGACCTCAAAGCTGAGAGTGTGGTTCTTGAGCATCGCAGCTACTGCTCGGCA
AAGGCCCGGGACAGACACTTTGCTGGGGATGTACTGGGCTATGTCACTCCATGGAACAGCCATGGCTACG
ATGTCACCAAGGTCTTTGGGAGCAAGTTCACACAGATCTCACCCGTCTGGCTGCAGCTGAAGAGACGTGG
CCGTGAGATGTTTGAGGTCACGGGCCTCCACGACGTGGACCAAGGGTGGATGCGAGCTGTCAGGAAGCAT
GCCAAGGGCCTGCACATAGTGCCTCGGCTCCTGTTTGAGGACTGGACTTACGATGATTTCCGGAACGTCT
TAGACAGTGAGGATGAGATAGAGGAGCTGAGCAAGACCGTGGTCCAGGTGGCAAAGAACCAGCATTTCGA
TGGCTTCGTGGTGGAGGTCTGGAACCAGCTGCTAAGCCAGAAGCGCGTGGGCCTCATCCACATGCTCACC
CACTTGGCCGAGGCTCTGCACCAGGCCCGGCTGCTGGCCCTCCTGGTCATCCCGCCTGCCATCACCCCCG
GGACCGACCAGCTGGGCATGTTCACGCACAAGGAGTTTGAGCAGCTGGCCCCCGTGCTGGATGGTTTCAG
CCTCATGACCTACGACTACTCTACAGCGCATCAGCCTGGCCCTAATGCACCCCTGTCCTGGGTTCGAGCC
TGCGTCCAGGTCCTGGACCCGAAGTCCAAGTGGCGAAGCAAAATCCTCCTGGGGCTCAACTTCTATGGTA
TGGACTACGCGACCTCCAAGGATGCCCGTGAGCCTGTTGTCGGGGCCAGGTACATCCAGACACTGAAGGA
CCACAGGCCCCGGATGGTGTGGGACAGCCAGGCCTCAGAGCACTTCTTCGAGTACAAGAAGAGCCGCAGT
GGGAGGCACGTCGTCTTCTACCCAACCCTGAAGTCCCTGCAGGTGCGGCTGGAGCTGGCCCGGGAGCTGG
GCGTTGGGGTCTCTATCTGGGAGCTGGGCCAGGGCCTGGACTACTTCTACGACCTGCTCTAG

Translation (393 aa):
MRTLFNLLWLALACSPVHTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSA
KARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKH
AKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLT
HLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRA
CVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVVGARYIQTLKDHRPRMVWDSQASEHFFEYKKSRS
GRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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