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Report for CCDS81512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81512.1 Public Homo sapiens 10 RAB11FIP2 24 110 108 CCDS HistoryNCBI Gene:22841Re-query CCDS DB by CCDS ID:81512.1Re-query CCDS DB by GeneID:22841See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81512.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369199.5 ENSP00000358200.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369199.5Link to Ensembl Protein Viewer:ENSP00000358200.3Re-query CCDS DB by Nucleotide ID:ENST00000369199Re-query CCDS DB by Protein ID:ENSP00000358200
Original member Current member NCBI NM_001330167.2 NP_001317096.1 Accepted alive Link to Nucleotide Sequence:NM_001330167.2Link to Protein Sequence:NP_001317096.1Re-query CCDS DB by Nucleotide ID:NM_001330167Re-query CCDS DB by Protein ID:NP_001317096Link to BLAST:NP_001317096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317096.1 532 Q7L804-2 532 100% 0 0

Chromosomal Locations for CCDS 81512.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 118008998 118009225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118015065 118015110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118033982 118034041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118038972 118039440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118040123 118040565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118045811 118046163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGATGCTGTCCGAGCAAGCCCAAAAGTGGTTTCCAACCCACGTGCAGGTCACAGTGCTCCAAGCCAAAG
ATCTGAAGCCAAAAGGCAAAAGTGGTACCAATGACACATACACTATAATTCAGCTGGGCAAGGAAAAGTA
CTCCACCTCTGTAGCTGAGAAAACCCTTGAGCCAGTTTGGAAGGAGGAGGCCTCTTTCGAGCTACCTGGA
TTGCTAATTCAGGGAAGTCCAGAGAAATACATTCTTTTCCTTATAGTTATGCACAGGTCCCTGGTGGGTC
TGGATAAATTTTTAGGGCAGGTGGCAATCAATCTCAATGACATCTTTGAGGACAAACAAAGAAGGAAAAC
AGAGTGGTTTAGATTAGAATCCAAACAAGGAAAACGAATCAAAAACAGGGGTGAGATAAAGGTCAATATT
CAGTTTATGAGGAACAATATGACCGCAAGTATGTTTGACTTATCAATGAAGGACAAAACCAGATCTCCTT
TTGCAAAGTTAAAAGATAAGATGAAGGGTAGAAAAAATGATGGAACATTTTCTGATACGTCTTCTGCAAT
CATTCCAAGTACTCACATGCCCGATGCCAATAGTGAATTTTCAAGTGGTGAAATACAGATGAAATCCAAA
CCAAAAAAGCCTTTTCTCTTGGGTCCTCAGCGACTCTCGTCAGCGCATTCAATGTCTGATTTATCTGGGT
CCCATATGTCTTCTGAGAAACTGAAGGCTGGCACCATAGGTCAAACACATCTTCTCGGACACCAGTTAGA
TTCCTTTGGAACAGTTCCAGAAAGTGGAAGTCTCAAATCTCCACACAGAAGAACATTAAGCTTTGATACT
TCTAAAATGAACCAACCTGACAGCATTGTGGATGAAGGTGAATTGTGTTTCGGAAGACAAAATGACCCAT
TTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAAAATCCATTTGAAGA
AAGCAGCGAAACATGGGACAGCAGCATGAATTTATTTTCAAAACCAATTGAAATAAGAAAAGAAAATAAA
AGAGAGAAAAGGGAGAAAGTTAGCCTGTTTGAAAGAGTGACTGGAAAAAAAGATAGCAGAAGATCTGATA
AACTTAACAATGGGGGATCTGATAGCCCTTGTGACTTGAAATCACCTAATGCATTTAGTGAAAATCGCCA
GGACTATTTTGATTATGAGTCAACCAATCCATTTACAGCAAAATTCAGGGCTTCAAATATAATGCCATCT
TCAAGAAATACTTTGCTGACCCCTGCAGTAGCTGAATGGAGAGGATCTTTGAGATGGGCAGAGCTTTTTC
ATATGAGTCCAACAAGCAATGAAGACCTCAGGAAAATCCCGGACAGCAACCCCTTTGATGCCACTGCAGG
GTATCGTAGTCTGACCTATGAAGAGGTTCTACAGGAGCTGGTGAAACACAAAGAACTCCTTAGGAGGAAA
GACACCCACATCCGGGAACTCGAGGACTACATCGACAACCTCCTTGTAAGGGTAATGGAAGAAACGCCCA
GTATTCTCAGAGTGCCGTATGAACCATCCAGGAAAGCTGGCAAATTCTCTAACAGTTAA

Translation (532 aa):
MMLSEQAQKWFPTHVQVTVLQAKDLKPKGKSGTNDTYTIIQLGKEKYSTSVAEKTLEPVWKEEASFELPG
LLIQGSPEKYILFLIVMHRSLVGLDKFLGQVAINLNDIFEDKQRRKTEWFRLESKQGKRIKNRGEIKVNI
QFMRNNMTASMFDLSMKDKTRSPFAKLKDKMKGRKNDGTFSDTSSAIIPSTHMPDANSEFSSGEIQMKSK
PKKPFLLGPQRLSSAHSMSDLSGSHMSSEKLKAGTIGQTHLLGHQLDSFGTVPESGSLKSPHRRTLSFDT
SKMNQPDSIVDEGELCFGRQNDPFTNVTASLPQKFATLPRKKNPFEESSETWDSSMNLFSKPIEIRKENK
REKREKVSLFERVTGKKDSRRSDKLNNGGSDSPCDLKSPNAFSENRQDYFDYESTNPFTAKFRASNIMPS
SRNTLLTPAVAEWRGSLRWAELFHMSPTSNEDLRKIPDSNPFDATAGYRSLTYEEVLQELVKHKELLRRK
DTHIRELEDYIDNLLVRVMEETPSILRVPYEPSRKAGKFSNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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