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Report for CCDS58093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58093.1 Public Homo sapiens 10 R3HCC1L 24 110 108 CCDS HistoryNCBI Gene:27291Re-query CCDS DB by CCDS ID:58093.1Re-query CCDS DB by GeneID:27291See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58093.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370586.6 ENSP00000359618.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370586.6Link to Ensembl Protein Viewer:ENSP00000359618.1Re-query CCDS DB by Nucleotide ID:ENST00000370586Re-query CCDS DB by Protein ID:ENSP00000359618
Original member Current member EBI ENST00000613938.4 ENSP00000479916.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613938.4Link to Ensembl Protein Viewer:ENSP00000479916.1Re-query CCDS DB by Nucleotide ID:ENST00000613938Re-query CCDS DB by Protein ID:ENSP00000479916
Original member Current member NCBI NM_001256621.2 NP_001243550.2 Accepted alive Link to Nucleotide Sequence:NM_001256621.2Link to Protein Sequence:NP_001243550.2Re-query CCDS DB by Nucleotide ID:NM_001256621Re-query CCDS DB by Protein ID:NP_001243550Link to BLAST:NP_001243550.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243550.2 184 Q7Z5L2-3 184 100% 0 0

Chromosomal Locations for CCDS 58093.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 98163395 98163397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98231512 98231687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98234446 98234516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98235425 98235520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98236024 98236164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98244091 98244158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGTTATCAGGGAATACCAAGAGCAGAGAGAGCATCCAGGAACCTAGATCTGATTACTACAATCATGAAG
TTCCTGATATTGACCTCAGTGATTGTGAATTCCCACATGTCATTGAAATTTATGACTTTCCCCAAGAATT
TCATACTGAAGACCTTCTACGGGTTTTCTGCAGTTATCAAAAGAAAGGATTTGATATTAAATGGGTGGAT
GATACACATGCCCTAGGAGTATTCTCCAGTCCAATTACAGCTCGTGATGCGTTGGGTATTAAACACACCA
TGGTGAAGATTCGTCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCTTATGCTGAGTT
CCTCCAGCCAGCAAAGGAGCGTCCTGAGACTTCAGCAGCCCTAGCCAGAAGGTTAGTCATCAGTGCCCTT
GGGGTTCGAAGTAAGCAGAGCAAAACCGAACGAGAAGCAGAGCTCAAGAAACTGCAAGAAGCCAGAGAGA
GAAAGCGGTTGGAAGCCAAGCAACGGGAAGACATCTGGGAAGGCAGAGACCAGTCTACAGTTTGA

Translation (184 aa):
MLSGNTKSRESIQEPRSDYYNHEVPDIDLSDCEFPHVIEIYDFPQEFHTEDLLRVFCSYQKKGFDIKWVD
DTHALGVFSSPITARDALGIKHTMVKIRPLSQATRAAKAKARAYAEFLQPAKERPETSAALARRLVISAL
GVRSKQSKTEREAELKKLQEARERKRLEAKQREDIWEGRDQSTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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