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Report for CCDS1602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1602.1 Public Homo sapiens 1 IRF2BP2 24 110 108 CCDS HistoryNCBI Gene:359948Re-query CCDS DB by CCDS ID:1602.1Re-query CCDS DB by GeneID:359948See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1602.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366609.4 ENSP00000355568.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366609.4Link to Ensembl Protein Viewer:ENSP00000355568.3Re-query CCDS DB by Nucleotide ID:ENST00000366609Re-query CCDS DB by Protein ID:ENSP00000355568
Original member Current member NCBI NM_182972.3 NP_892017.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182972.3Link to Protein Sequence:NP_892017.2Re-query CCDS DB by Nucleotide ID:NM_182972Re-query CCDS DB by Protein ID:NP_892017Link to BLAST:NP_892017.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_892017.2 587 Q7Z5L9-1 587 100% 0 0

Chromosomal Locations for CCDS 1602.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 234607137 234607852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234608447 234609494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGGCCGCGGCGGTGGCGGTGGCGGCCGCGTCCCGGCGGCAGTCGTGCTACCTGTGTGACCTGCCCCGCA
TGCCCTGGGCCATGATCTGGGACTTCACCGAACCCGTCTGCCGCGGCTGCGTCAACTACGAGGGCGCCGA
CCGCGTCGAGTTCGTCATCGAGACGGCGCGGCAGCTCAAGCGGGCGCACGGCTGCTTCCCGGAGGGTCGC
TCCCCACCCGGCGCCGCGGCCTCGGCCGCCGCCAAGCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGC
AGCAGCAGCAGCAGCTTGGCCACGGCGGCCCCGAGGCGGCCCCGCGCGCGCCGCAGGCCTTGGAGCGCTA
CCCGTTGGCGGCCGCGGCCGAGAGGCCCCCGCGCCTCGGCTCTGACTTCGGCAGCAGCCGCCCGGCAGCG
AGCCTGGCCCAGCCGCCGACGCCGCAGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAACGGCTTCTCCA
AGCTAGAGGAGCCGCCCGAGCTGAATCGCCAGAGCCCGAACCCGCGGCGCGGCCACGCGGTGCCGCCCAC
CCTGGTGCCGCTCATGAACGGCTCGGCCACGCCGCTGCCCACCGCGCTCGGCCTCGGCGGCCGCGCTGCC
GCCTCCTTAGCCGCGGTGTCCGGAACCGCGGCCGCCAGCCTGGGCTCCGCGCAGCCCACCGATCTGGGCG
CCCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAA
GGAGAAACAACCGCCGCCGCCTGCGCACCGGGGCCCGGCCGACAGCCTGTCCACCGCGGCCGGGGCCGCC
GAGCTGAGCGCGGAAGGTGCGGGCAAGAGCCGCGGGTCTGGAGAGCAGGACTGGGTCAACAGGCCCAAGA
CCGTGCGCGACACGCTGCTGGCGCTGCACCAGCACGGCCACTCGGGGCCCTTCGAGAGCAAGTTTAAGAA
GGAGCCGGCCCTGACTGCAGGCAGGTTGTTGGGTTTCGAGGCCAACGGGGCCAACGGGTCTAAAGCAGTT
GCAAGAACAGCAAGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAAGTCGGGCCCCCTAAGATCAACG
GAGAGGCCCAGCCGTGGCTGTCCACATCCACAGAGGGGCTCAAGATCCCCATGACTCCTACATCCTCTTT
TGTGTCTCCGCCACCACCCACTGCCTCACCTCATTCCAACCGGACCACACCGCCTGAAGCGGCCCAGAAT
GGCCAGTCCCCCATGGCAGCCCTGATCTTAGTAGCAGACAATGCAGGGGGCAGTCATGCCTCAAAAGATG
CCAACCAGGTTCACTCCACTACCAGGAGGAATAGCAACAGTCCGCCCTCTCCGTCCTCTATGAACCAAAG
AAGGCTGGGCCCCAGAGAGGTGGGGGGCCAGGGAGCAGGCAACACAGGAGGACTGGAGCCAGTGCACCCT
GCCAGCCTCCCGGACTCCTCTCTGGCAACCAGTGCCCCGCTGTGCTGCACCCTCTGCCACGAGCGGCTGG
AGGACACCCATTTTGTGCAGTGCCCGTCCGTCCCTTCGCACAAGTTCTGCTTCCCTTGCTCCAGACAAAG
CATCAAACAGCAGGGAGCTAGTGGAGAGGTCTATTGTCCCAGTGGGGAAAAATGCCCTCTTGTGGGCTCC
AATGTCCCCTGGGCCTTTATGCAAGGGGAAATTGCAACCATCCTTGCTGGAGATGTGAAAGTGAAAAAAG
AGAGAGACTCGTGA

Translation (587 aa):
MAAAVAVAAASRRQSCYLCDLPRMPWAMIWDFTEPVCRGCVNYEGADRVEFVIETARQLKRAHGCFPEGR
SPPGAAASAAAKPPPLSAKDILLQQQQQLGHGGPEAAPRAPQALERYPLAAAAERPPRLGSDFGSSRPAA
SLAQPPTPQPPPVNGILVPNGFSKLEEPPELNRQSPNPRRGHAVPPTLVPLMNGSATPLPTALGLGGRAA
ASLAAVSGTAAASLGSAQPTDLGAHKRPASVSSSAAVEHEQREAAAKEKQPPPPAHRGPADSLSTAAGAA
ELSAEGAGKSRGSGEQDWVNRPKTVRDTLLALHQHGHSGPFESKFKKEPALTAGRLLGFEANGANGSKAV
ARTARKRKPSPEPEGEVGPPKINGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTASPHSNRTTPPEAAQN
GQSPMAALILVADNAGGSHASKDANQVHSTTRRNSNSPPSPSSMNQRRLGPREVGGQGAGNTGGLEPVHP
ASLPDSSLATSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRQSIKQQGASGEVYCPSGEKCPLVGS
NVPWAFMQGEIATILAGDVKVKKERDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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