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Report for CCDS1534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1534.1 Public Homo sapiens 1 BROX 24 110 108 CCDS HistoryNCBI Gene:148362Re-query CCDS DB by CCDS ID:1534.1Re-query CCDS DB by GeneID:148362See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340934.10 ENSP00000343742.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340934.10Link to Ensembl Protein Viewer:ENSP00000343742.5Re-query CCDS DB by Nucleotide ID:ENST00000340934Re-query CCDS DB by Protein ID:ENSP00000343742
Original member Current member NCBI NM_001375661.1 NP_001362590.1 Accepted alive Link to Nucleotide Sequence:NM_001375661.1Link to Protein Sequence:NP_001362590.1Re-query CCDS DB by Nucleotide ID:NM_001375661Re-query CCDS DB by Protein ID:NP_001362590Link to BLAST:NP_001362590.1
Original member Current member NCBI NM_144695.4 NP_653296.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144695.4Link to Protein Sequence:NP_653296.2Re-query CCDS DB by Nucleotide ID:NM_144695Re-query CCDS DB by Protein ID:NP_653296Link to BLAST:NP_653296.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362590.1 411 Q5VW32-1 411 100% 0 0
NP_653296.2 411 Q5VW32-1 411 100% 0 0

Chromosomal Locations for CCDS 1534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 222715700 222715800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222718925 222719031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222719263 222719359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222722419 222722514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222724092 222724164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222725450 222725555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222727168 222727257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222728743 222728828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222729620 222729701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222730027 222730177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222731357 222731516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222732628 222732714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGACCCATTGGTTTCATAGGAACCCATTAAAAGCCACAGCTCCTGTGTCTTTTAATTACTATGGTGTAG
TCACTGGCCCTTCTGCTTCAAAAATATGCAATGACTTGAGGTCATCCAGGGCACGACTCCTTGAACTGTT
CACTGATTTGAGCTGTAATCCAGAAATGATGAAGAATGCAGCAGATTCATATTTCTCACTTTTACAAGGT
TTCATAAATTCTTTGGATGAATCTACCCAAGAAAGCAAGTTACGATATATTCAAAATTTCAAGTGGACTG
ATACATTGCAAGGACAGGTTCCAAGTGCCCAGCAGGATGCTGTTTTTGAATTAATTTCCATGGGATTTAA
TGTAGCTTTATGGTATACCAAATATGCTTCAAGACTGGCTGGAAAAGAAAATATAACAGAAGATGAAGCA
AAAGAAGTTCATCGAAGCCTAAAGATTGCAGCTGGGATTTTTAAACATTTAAAGGAAAGTCATCTCCCAA
AACTCATTACACCTGCGGAAAAAGGAAGAGATTTAGAGTCACGACTCATAGAAGCATACGTTATTCAATG
TCAGGCTGAAGCTCAAGAAGTAACAATTGCTCGAGCAATTGAACTAAAACATGCTCCTGGACTAATTGCT
GCACTGGCGTATGAAACAGCCAATTTCTATCAAAAAGCTGATCATACTTTATCCAGTTTGGAGCCTGCAT
ATTCTGCCAAATGGAGAAAATATCTTCACTTGAAGATGTGTTTCTACACAGCTTATGCTTACTGTTACCA
TGGTGAGACTTTATTGGCTAGTGATAAATGCGGTGAAGCAATCAGGTCTCTCCAAGAAGCAGAAAAATTG
TATGCAAAGGCAGAAGCACTGTGTAAAGAATATGGAGAAACCAAAGGACCTGGACCAACAGTCAAACCTT
CAGGACATCTGTTCTTTAGGAAACTTGGAAACCTTGTGAAGAACACCCTAGAAAAATGTCAGAGAGAAAA
TGGATTTATTTACTTTCAAAAAATTCCAACAGAAGCCCCACAGCTGGAACTCAAAGCAAATTATGGTCTC
GTAGAGCCTATACCTTTCGAATTTCCTCCTACAAGTGTTCAGTGGACACCAGAAACATTGGCTGCATTTG
ATCTCACCAAAAGACCCAAGGATGACAGTACTAAACCCAAACCAGAAGAAGAAGTGAAACCTGTGAAAGA
ACCAGACATCAAACCTCAAAAGGACACTGGGTGCTACATCTCCTAA

Translation (411 aa):
MTHWFHRNPLKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQG
FINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEA
KEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAPGLIA
ALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKL
YAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQKIPTEAPQLELKANYGL
VEPIPFEFPPTSVQWTPETLAAFDLTKRPKDDSTKPKPEEEVKPVKEPDIKPQKDTGCYIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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