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Report for CCDS1218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1218.1 Public Homo sapiens 1 NIT1 24 110 108 CCDS HistoryNCBI Gene:4817Re-query CCDS DB by CCDS ID:1218.1Re-query CCDS DB by GeneID:4817See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1218.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368009.7 ENSP00000356988.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368009.7Link to Ensembl Protein Viewer:ENSP00000356988.2Re-query CCDS DB by Nucleotide ID:ENST00000368009Re-query CCDS DB by Protein ID:ENSP00000356988
Original member Current member NCBI NM_005600.3 NP_005591.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005600.3Link to Protein Sequence:NP_005591.1Re-query CCDS DB by Nucleotide ID:NM_005600Re-query CCDS DB by Protein ID:NP_005591Link to BLAST:NP_005591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005591.1 327 Q86X76-1 327 100% 0 0

Chromosomal Locations for CCDS 1218.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161118177 161118178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161118786 161118881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161119134 161119388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161119509 161119612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161119819 161119952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161120107 161120232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161120499 161120765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGCTGGGCTTCATCACCAGGCCTCCTCACAGATTCCTGTCCCTTCTGTGTCCTGGACTCCGGATACCTC
AACTCTCAGTACTTTGTGCTCAGCCCAGGCCCAGAGCCATGGCTATCTCCTCTTCCTCCTGCGAACTGCC
CCTGGTGGCTGTGTGCCAGGTAACATCGACGCCAGACAAGCAACAGAACTTTAAAACATGTGCTGAGCTG
GTTCGAGAGGCTGCCAGACTGGGTGCCTGCCTGGCTTTCCTGCCTGAGGCATTTGACTTCATTGCACGGG
ACCCTGCAGAGACGCTACACCTGTCTGAACCACTGGGTGGGAAACTTTTGGAAGAATACACCCAGCTTGC
CAGGGAATGTGGACTCTGGCTGTCCTTGGGTGGTTTCCATGAGCGTGGCCAAGACTGGGAGCAGACTCAG
AAAATCTACAATTGTCACGTGCTGCTGAACAGCAAAGGGGCAGTAGTGGCCACTTACAGGAAGACACATC
TGTGTGACGTAGAGATTCCAGGGCAGGGGCCTATGTGTGAAAGCAACTCTACCATGCCTGGGCCCAGTCT
TGAGTCACCTGTCAGCACACCAGCAGGCAAGATTGGTCTAGCTGTCTGCTATGACATGCGGTTCCCTGAA
CTCTCTCTGGCATTGGCTCAAGCTGGAGCAGAGATACTTACCTATCCTTCAGCTTTTGGATCCATTACAG
GCCCAGCCCACTGGGAGGTGTTGCTGCGGGCCCGTGCTATCGAAACCCAGTGCTATGTAGTGGCAGCAGC
ACAGTGTGGACGCCACCATGAGAAGAGAGCAAGTTATGGCCACAGCATGGTGGTAGACCCCTGGGGAACA
GTGGTGGCCCGCTGCTCTGAGGGGCCAGGCCTCTGCCTTGCCCGAATAGACCTCAACTATCTGCGACAGT
TGCGCCGACACCTGCCTGTGTTCCAGCACCGCAGGCCTGACCTCTATGGCAATCTGGGTCACCCACTGTC
TTAA

Translation (327 aa):
MLGFITRPPHRFLSLLCPGLRIPQLSVLCAQPRPRAMAISSSSCELPLVAVCQVTSTPDKQQNFKTCAEL
VREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQ
KIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPE
LSLALAQAGAEILTYPSAFGSITGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGT
VVARCSEGPGLCLARIDLNYLRQLRRHLPVFQHRRPDLYGNLGHPLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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