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Report for CCDS53367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53367.1 Public Homo sapiens 1 CELF3 24 110 108 CCDS HistoryNCBI Gene:11189Re-query CCDS DB by CCDS ID:53367.1Re-query CCDS DB by GeneID:11189See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53367.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290585.8 ENSP00000290585.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000290585.8Link to Ensembl Protein Viewer:ENSP00000290585.4Re-query CCDS DB by Nucleotide ID:ENST00000290585Re-query CCDS DB by Protein ID:ENSP00000290585
Original member Current member NCBI NM_001172649.4 NP_001166120.1 Accepted alive Link to Nucleotide Sequence:NM_001172649.4Link to Protein Sequence:NP_001166120.1Re-query CCDS DB by Nucleotide ID:NM_001172649Re-query CCDS DB by Protein ID:NP_001166120Link to BLAST:NP_001166120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166120.1 415 Q5SZQ8-4 415 100% 0 0

Chromosomal Locations for CCDS 53367.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151705041 151705168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151705822 151705965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151706224 151706361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151706669 151706734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151707507 151707648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151707792 151707935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151708998 151709077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151709220 151709348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151709743 151709791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151714594 151714676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151715876 151716020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGAAGGAGCCGGATGCCATCAAGCTGTTTGTGGGGCAGATCCCGAGGCATCTGGAGGAGAAGGACCTGA
AGCCCATCTTCGAACAGTTTGGTCGGATCTTTGAGCTGACTGTCATCAAGGACAAGTACACCGGGCTGCA
CAAGGGATGTGCCTTCCTGACATACTGTGCCCGGGATTCAGCCCTGAAGGCCCAGAGCGCCCTGCACGAA
CAGAAGACGCTTCCAGGGATGAACAGGCCGATCCAGGTCAAGCCAGCCGACAGCGAGAGCCGAGGAGAAG
ACCGGAAGCTCTTTGTGGGGATGCTAGGGAAGCAGCAGACAGATGAGGACGTCCGGAAGATGTTTGAGCC
CTTCGGGACCATCGACGAGTGCACTGTGCTCCGGGGGCCAGATGGCACCAGCAAAGGCTGCGCCTTCGTG
AAGTTCCAGACCCACGCTGAGGCCCAGGCGGCCATCAACACCCTTCACAGCAGCCGGACCCTGCCAGGTG
CCTCGTCCAGCCTGGTGGTGAAGTTTGCTGACACTGAGAAGGAGCGAGGTCTCCGCCGCATGCAGCAGGT
GGCCACCCAGTTGGGCATGTTCAGCCCCATCGCCCTCCAGTTTGGAGCCTACAGCGCCTACACCCAGGCC
CTGATGCAGCAGCAGGCGGCCCTGGTAGCGGCTCACAGTGCCTACCTCAGCCCCATGGCCACCATGGCTG
CCGTGCAGATGCAGCACATGGCTGCCATCAATGCCAATGGCCTCATCGCCACCCCCATCACCCCATCCTC
AGCCCAGAGCCCCGCGGCCCCCGTGGACCCCCTGCAGCAGGCCTACGCGGGGATGCAGCACTACACAGCA
GCCTACCCAGCAGCCTACAGCCTGGTTGCACCTGCGTTCCCGCAGCCTCCAGCCCTGGTCGCCCAGCAGC
CCCCACCACCACCTCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAAAGAGAAGGCCC
TGATGGCTGCAACATCTTCATCTACCACCTGCCCCAGGAGTTCACTGACTCAGAGATCCTCCAGATGTTT
GTCCCCTTTGGCCACGTCATCTCAGCCAAAGTCTTTGTTGACCGAGCCACCAATCAAAGCAAATGTTTTG
GCTTTGTGAGTTTCGACAATCCGGCCAGTGCCCAGGCTGCCATCCAGGCCATGAATGGCTTCCAGATCGG
CATGAAGCGCCTCAAAGTCCAGCTAAAGCGGCCTAAGGATGCCAACCGGCCCTACTGA

Translation (415 aa):
MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHE
QKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFV
KFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA
LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSAQSPAAPVDPLQQAYAGMQHYTA
AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMF
VPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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