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Report for CCDS72710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72710.1 Public Homo sapiens 1 DNAJC16 24 110 108 CCDS HistoryNCBI Gene:23341Re-query CCDS DB by CCDS ID:72710.1Re-query CCDS DB by GeneID:23341See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72710.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616884.4 ENSP00000480224.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616884.4Link to Ensembl Protein Viewer:ENSP00000480224.1Re-query CCDS DB by Nucleotide ID:ENST00000616884Re-query CCDS DB by Protein ID:ENSP00000480224
Original member Current member NCBI NM_001287811.2 NP_001274740.1 Accepted alive Link to Nucleotide Sequence:NM_001287811.2Link to Protein Sequence:NP_001274740.1Re-query CCDS DB by Nucleotide ID:NM_001287811Re-query CCDS DB by Protein ID:NP_001274740Link to BLAST:NP_001274740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274740.1 470 Q9Y2G8-2 470 100% 0 0

Chromosomal Locations for CCDS 72710.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 15548342 15548428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15559526 15559656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15562142 15562325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15563929 15564111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15564283 15564359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15565919 15565999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15566082 15566180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15567099 15567269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15567778 15568177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGACAAGGCGGTACAACATCAATATCTACGCCCCTACCCTCTTGGTCTTTAAAGAACATATAAACAGGC
CT
GCCGATGTTATCCAGGCCCGAGGTATGAAGAAGCAAATCATTGACGACTTCATCACCCGAAACAAATA
T
CTATTGGCAGCCAGGCTCACCAGCCAGAAGTTGTTCCATGAACTCTGCCCTGTGAAACGGTCGCATCGA
CAG
AGGAAGTACTGTGTGGTTTTATTGACTGCTGAGACTACCAAGTTGAGCAAACCCTTTGAGGCTTTCC
TG
TCCTTTGCCCTGGCAAACACTCAAGACACAGTGAGATTTGTGCATGTCTACAGCAATCGGCAGCAGGA
G
TTTGCCGACACCTTACTACCAGACAGTGAGGCGTTTCAAGGGAAATCAGCGGTGTCTATTTTAGAAAGG
CGC
AACACAGCAGGAAGGGTGGTGTATAAAACCCTGGAAGACCCTTGGATTGGGAGTGAGAGTGACAAAT
TT
ATCCTCTTGGGCTATCTCGACCAGCTGCGTAAAGATCCAGCTCTTCTGTCCTCTGAAGCAGTGCTTCC
T
GACCTGACCGATGAACTTGCCCCTGTTTTTCTCCTTCGATGGTTCTACTCTGCTTCTGACTACATCTCA
GAC
TGCTGGGATAGCATTTTTCACAACAACTGGAGGGAAATGATGCCCCTGCTGTCCCTGATCTTCTCTG
CC
CTCTTCATCCTCTTCGGCACTGTCATCGTTCAGGCTTTCAGCGACTCTAATGATGAGCGAGAGTCAAG
C
CCTCCAGAAAAAGAGGAAGCCCAAGAGAAGACTGGGAAAACTGAGCCAAGCTTCACCAAAGAAAACAGC
AG
C
AAGATTCCTAAAAAAGGCTTTGTGGAGGTAACTGAACTCACAGATGTAACATACACCAGTAACTTGG
TA
CGTCTGAGGCCAGGCCACATGAATGTGGTCCTCATCCTGTCGAATTCTACCAAGACCAGCCTACTACA
G
AAATTTGCTTTGGAGGTCTACACATTTACTGGGAGCAGCTGCCTACACTTCTCCTTCCTGAGTCTAGAT
AAA
CACAGAGAATGGCTAGAATACTTACTAGAATTTGCTCAAGATGCAGCTCCAATCCCAAACCAATATG
AT
AAGCATTTCATGGAGCGTGACTACACTGGTTATGTACTGGCTCTGAATGGCCACAAGAAATACTTCTG
C
CTCTTCAAGCCCCAAAAGACAGTCGAAGAGGAGGAAGCCATAGGGTCGTGCAGTGATGTTGACTCTTCC
CTC
TACCTGGGTGAATCTCGAGGGAAACCTTCCTGTGGCCTTGGATCCAGGCCCATCAAAGGAAAGTTGA
GC
AAGCTCTCTTTATGGATGGAACGCCTGCTGGAGGGCTCCTTACAGAGGTTTTATATCCCATCATGGCC
T
GAACTAGACTGA


Translation (470 aa):
MTRRYNINIYAPTLLVFKEHINRPADVIQARGMKKQIIDDFITRNKYLLAARLTSQKLFHELCPVKRSHR
Q
R
KYCVVLLTAETTKLSKPFEAFLSFALANTQDTVRFVHVYSNRQQEFADTLLPDSEAFQGKSAVSILER
R
NTAGRVVYKTLEDPWIGSESDKFILLGYLDQLRKDPALLSSEAVLPDLTDELAP
VFLLRWFYSASDYIS
D
CWDSIFHNN
WREMMPLLSLIFSALFILFGTVIVQAFSDSNDERESSPPEKEEAQEKTGKTEPSFTKENS
S
KIPKKGFVEVTELTDVTYTSNLVRLRPGHMNVVLILSNSTKTSLLQKFALEVYTFTGSSCLHFSFLSLD
K
HREWLEYLLEFAQDAAPIPNQYDKHFMERDYTGYVLALNGHKKYFCLFKPQKTVEEEEAIGSCSDVDSS
L
YLGESRGKPSCGLGSRPIKGKLSKLSLWMERLLEGSLQRFYIPSWPELD




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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