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Report for CCDS30475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30475.1 Public Mus musculus X Gpr173 23 108 98 CCDS HistoryNCBI Gene:70771Re-query CCDS DB by CCDS ID:30475.1Re-query CCDS DB by GeneID:70771See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070316.11 ENSMUSP00000065533.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070316.11Link to Ensembl Protein Viewer:ENSMUSP00000065533.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000070316Re-query CCDS DB by Protein ID:ENSMUSP00000065533
Original member Current member NCBI NM_001313748.2 NP_001300677.1 Accepted alive Link to Nucleotide Sequence:NM_001313748.2Link to Protein Sequence:NP_001300677.1Re-query CCDS DB by Nucleotide ID:NM_001313748Re-query CCDS DB by Protein ID:NP_001300677Link to BLAST:NP_001300677.1
Original member Current member NCBI NM_001359449.1 NP_001346378.1 Accepted alive Link to Nucleotide Sequence:NM_001359449.1Link to Protein Sequence:NP_001346378.1Re-query CCDS DB by Nucleotide ID:NM_001359449Re-query CCDS DB by Protein ID:NP_001346378Link to BLAST:NP_001346378.1
Original member Current member NCBI NM_001359450.1 NP_001346379.1 Accepted alive Link to Nucleotide Sequence:NM_001359450.1Link to Protein Sequence:NP_001346379.1Re-query CCDS DB by Nucleotide ID:NM_001359450Re-query CCDS DB by Protein ID:NP_001346379Link to BLAST:NP_001346379.1
Original member Current member NCBI NM_027543.5 NP_081819.2 Accepted alive Link to Nucleotide Sequence:NM_027543.5Link to Protein Sequence:NP_081819.2Re-query CCDS DB by Nucleotide ID:NM_027543Re-query CCDS DB by Protein ID:NP_081819Link to BLAST:NP_081819.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300677.1 373 Q6PI62 373 100% 0 0
NP_001346378.1 373 Q6PI62 373 100% 0 0
NP_001346379.1 373 Q6PI62 373 100% 0 0
NP_081819.2 373 Q6PI62 373 100% 0 0

Chromosomal Locations for CCDS 30475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 152346354 152347475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGCCAACACCACCGGAGAGCCCGAAGAGGTGAGCGGCGCACTGTCTCTGCCATCAGCATCGGCTTATG
TGAAGCTGGTGCTGCTGGGACTGATCATGTGTGTAAGCCTGGCAGGCAATGCCATCTTGTCCCTGCTGGT
GCTCAAGGAGCGTGCCCTGCACAAGGCTCCTTACTACTTTCTGCTGGACCTGTGCCTAGCCGATGGCATA
CGCTCTGCCATCTGCTTCCCCTTTGTACTGGCTTCTGTGCGCCATGGCTCCTCATGGACCTTCAGTGCAC
TCAGCTGTAAGATTGTGGCCTTTATGGCTGTGCTCTTTTGCTTCCATGCGGCCTTCATGCTGTTCTGCAT
CAGCGTCACCCGCTACATGGCCATCGCCCACCACCGCTTCTATGCCAAGCGCATGACACTCTGGACATGC
GCAGCTGTCATCTGCATGGCCTGGACCTTGTCTGTGGCCATGGCTTTCCCACCTGTCTTTGATGTGGGCA
CCTACAAGTTTATCCGAGAGGAGGACCAGTGCATCTTTGAGCATCGCTACTTCAAAGCAAATGACACACT
GGGCTTTATGCTTATGTTGGCTGTGCTCATGGCAGCCACACATGCTGTCTATGGCAAGCTGCTACTCTTC
GAGTATCGTCACCGCAAGATGAAGCCAGTGCAGATGGTGCCAGCCATCAGCCAAAACTGGACATTCCATG
GCCCTGGGGCTACCGGCCAGGCTGCTGCCAACTGGATCGCTGGTTTTGGCCGTGGGCCCATGCCACCAAC
TCTGCTGGGTATCCGGCAGAATGGGCATGCAGCTAGCCGGCGGCTACTGGGCATGGACGAGGTCAAGGGT
GAAAAGCAGCTGGGCCGAATGTTCTACGCGATTACACTGCTCTTCCTGCTCCTCTGGTCACCATACATTG
TGGCCTGCTACTGGCGAGTGTTTGTGAAAGCCTGCGCTGTGCCCCACCGCTACTTGGCCACTGCTGTTTG
GATGAGCTTCGCCCAGGCTGCCGTCAACCCAATCGTCTGCTTCCTGCTTAACAAGGACCTCAAGAAGTGC
CTGAGGACTCATGCCCCTTGCTGGGGCACAGGAGGTGCCCCAGCTCCCAGAGAACCCTACTGTGTCATGT
GA

Translation (373 aa):
MANTTGEPEEVSGALSLPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYFLLDLCLADGI
RSAICFPFVLASVRHGSSWTFSALSCKIVAFMAVLFCFHAAFMLFCISVTRYMAIAHHRFYAKRMTLWTC
AAVICMAWTLSVAMAFPPVFDVGTYKFIREEDQCIFEHRYFKANDTLGFMLMLAVLMAATHAVYGKLLLF
EYRHRKMKPVQMVPAISQNWTFHGPGATGQAAANWIAGFGRGPMPPTLLGIRQNGHAASRRLLGMDEVKG
EKQLGRMFYAITLLFLLLWSPYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKC
LRTHAPCWGTGGAPAPREPYCVM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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