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Report for CCDS80941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80941.1 Public Mus musculus 8 Zc3h18 23 108 98 CCDS HistoryNCBI Gene:76014Re-query CCDS DB by CCDS ID:80941.1Re-query CCDS DB by GeneID:76014See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176629.7 ENSMUSP00000134743.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176629.7Link to Ensembl Protein Viewer:ENSMUSP00000134743.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176629Re-query CCDS DB by Protein ID:ENSMUSP00000134743
Original member Current member NCBI NM_001310650.1 NP_001297579.1 Accepted alive Link to Nucleotide Sequence:NM_001310650.1Link to Protein Sequence:NP_001297579.1Re-query CCDS DB by Nucleotide ID:NM_001310650Re-query CCDS DB by Protein ID:NP_001297579Link to BLAST:NP_001297579.1

Chromosomal Locations for CCDS 80941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122383414 122384004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122386862 122386946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122387693 122387764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122397818 122397966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122398236 122398328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122399005 122399162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122401591 122401708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122403151 122403419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122407332 122407523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122408243 122408368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122410881 122410985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122411284 122411427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122412990 122413150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122413263 122413462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122413857 122413950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122416036 122416132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122416476 122416674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGGATGTGGCCGAGAGCCCTGAACTGGATCCTCACTCCCCAGAGGATGAAGAGCAGCCGGCACTCTCAG
ATGATGACATTCTAAGAGAAAGTGGATCTGAACAAGATTTGGATGGAGCTGGGGAAAGGGCGTCTGATTT
GGAGGAGGAGGAAAATGCAACCAGGGTACAAAGCCAGGAGGAGACTCGCTCGGATGAGGAAGACCGAGCC
AGTGAGCCCAAGTCCCAAGATCAGGACTCAGAGGCTCATGAGCTGAGCAGGGGCCCAGCGGGATCCCCAT
GCGAGGAGGGGGATGATGTTGAGGAAGATGGGACAAGTGACCTCAGGGACGAAGCCTCCTCGGTGACCCG
GGAACTGGATGAGCATGAACTAGACTATGATGAGGAGGTCCCTGAGGAGCCAGCTCCTGCTGCCCAGGAG
GAGGAGGCTGAGAAGGCTGGGGCTGAGGAGGAGGAGGAGAAGGGGGAAGGGGCTCCCGGAGAGGAAGGGA
AGCCTGATGTTCAAAGTGTGGGAGAACAAGAACCCACAGAAGCTGCCAAGGAGAAGAAGAAAGAGGATGA
CGACGGGGAGATCGATGATGGCGAGATAGACGATGATGACTTGGAGGAAGGCGAGGTGAAGGACCCCAGT
GACCGGAAGGTGAGGCCTCGCCCCACCTGCCGATTCTTCATGAAAGATGTTGTGACACCATTATCCACTC
TTCTTCCACCAATACCAAATTCCATACCACTCAGAGGCCAGGTTAAAGGAAACTGCACGTGGGGAATGAG
CTGTAGGTTTATCCACCCTGGAGTGAATGACAAAGGCAACTACTCCCTCATCACCAAAGCGGAACCTTTT
CCACCCAACGGTGCCCCGCCTCTTGGACCTCACCCACTGATGCCTGCCAACCCTTGGGGTGGGCCAGTGG
TTGATGAAATTTTGCCTCCACCCCCTCCAGAGCCCCCAACAGAGAGCGCCTGGGAACGTGGACTCCGACA
TGCAAAAGAGGTTTTAAAAAAAGCAACCATTCGGAAAGAGCAGGAGCCCGACTTTGAAGAAAAAAGGTTC
ACAGTAACCATTGGTGAAGACGACCGGGAGTTTGACAAGGAGAATGAAGTCTTCCGAGATTGGAATTCTC
GAGTCCCGAGAGATGTCAGAGACACAACACTTGAGCCTTATGCAGACCCTTATTATGACTATGAGATAGA
ACGGTTTTGGCGTGGTGGACAGTACGAGAATTTCAGGGTGCAGTATACAGAAGCAGAACCGTATCATAAC
TATCGCGAACGAGAGAGGGAACGAGAGCGAGAAAACAGACAACGAGAACGCGAGCGGGAACGAGAGCGTG
ACCGAGAGCGGGAGCGCAGGCAGAGAGAGCGGGAGCGAGAACGGGAACGAGAGCGGGACAAGGAGCGGCA
GCGGAGGAAAGAGGAGTGGGAGAGAGAGAGAGCCAAGCGAGACGAGAAGGACCGGCAACACCGAGACCGA
GACAGGGACAAGGACCGGGAGAAGGACAAGGAGAAGCCGAAGCCCAGGTCCCCACAGCCACCGAGCCGTC
AAGCTGAACCACCAAAGAAGGAGAGCACCTCTGTGGGGCCCCAGGTGAAGCGAGCCGATGAGTGGAAGGA
CCCCTGGCGCCGATCCAAGTCTCCCAAGAAGAAGCTTGGCGTGTCCGTCTCCCCAAGCCGGGCACGAAGA
CGTCGCAAAACCTCCGCCTCCTCAGCCTCTGCTTCCAATTCCTCCAGGTCATCGTCACGGTCTTCATCCT
ACTCTGGCTCTGGCTCGTCCCGCTCCCGCTCCCGCTCCTCCTCCTACAGCTCCTATTCTAGCCGCTCTTC
CAGACACAGCTCGTTCTCAGGCAGCCGATCCAGGTCCCGGTCCTTCTCCTCGTCCCCATCCCCGTCTCCC
ACACCTTCCCCACACAGACCTCCAGTCAGAACCAAGGGGGAGCCGGCCCCACCTCCTGGGAAAGCAGGGG
AGAAGTCAATAAAGAAGCCAGCCCCTCCCCCAGCCCCACCACAGGCCACCAAAACTACTGCTCCTGGTCC
TGAGCCTGCCAAACCTGGAGATCTCCGAGAAGCCAGGAGAAAGGAGCGGCAAACCAGGACTCCCCCAAGG
AGGTCTCTGAGTGTGAGCAGCGTTTCCTCAGTGTCCAGCGCCACCTCGAGTAGCAGCTCAGTGCACAGTG
TGGACTCAGATGACATGTATGCAGACCTGGCCAGTCCTGTGTCCTCAGCCAGCTCTCGATCCCCAACTCC
TGCCCAGACCAAGAAGGAGAGAGGGAAATCCAAGAAAGAAGACGGAGTGAGAGAGGAAAAGCGGAGGCGG
GACCCATCCGCGCAGCCGCCCAAGTCCTCTAAAGCTCCAGCGGGTGGGAAGGCCTCCCAGCAGGCAGCGG
CGCCTCAGCCGGCGGTCCCCGGGCAGCCCCAACAGGGCTCCTTTGTTGCCCACAAGGAGATAAAGCTGAC
ACTGCTGAACAAGGCGGCTGATAAAGGAAGCCGGAAGCGCTATGAGCCATCAGACAAGGACCGGCAGAGC
CCTCCTGCCAAGAAGGCCAACTTGTCCCCAGACCGAGGTTCTCGAGACCGGAAATCAGGTGGAAGAATGG
GCTCCCCAAAACCAGAGAGGCAGAGAGGCCAGAACGCTAAAGCTCCTGCTGCCCCAGCGGACAGGAAGCG
TCCACTGTCACCCCAGTCTAAGGGCTCCAGCAAGGTCACCAGCGTGCCTGGCAAAGCCACAGATACTGCC
ACAGCAGGCACCAAGTCAGGGAAGGCCAGCACATTGTCACGGCGAGAGGAGCTCCTTAAACAGCTCAAAG
CGGTTGAGGACGCCATCGCTCGCAAGCGGGCCAAGATCCCCGGGAAAGTGTAG

Translation (950 aa):
MDVAESPELDPHSPEDEEQPALSDDDILRESGSEQDLDGAGERASDLEEEENATRVQSQEETRSDEEDRA
SEPKSQDQDSEAHELSRGPAGSPCEEGDDVEEDGTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQE
EEAEKAGAEEEEEKGEGAPGEEGKPDVQSVGEQEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPS
DRKVRPRPTCRFFMKDVVTPLSTLLPPIPNSIPLRGQVKGNCTWGMSCRFIHPGVNDKGNYSLITKAEPF
PPNGAPPLGPHPLMPANPWGGPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRF
TVTIGEDDREFDKENEVFRDWNSRVPRDVRDTTLEPYADPYYDYEIERFWRGGQYENFRVQYTEAEPYHN
YRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDR
DRDKDREKDKEKPKPRSPQPPSRQAEPPKKESTSVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARR
RRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSP
TPSPHRPPVRTKGEPAPPPGKAGEKSIKKPAPPPAPPQATKTTAPGPEPAKPGDLREARRKERQTRTPPR
RSLSVSSVSSVSSATSSSSSVHSVDSDDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRRR
DPSAQPPKSSKAPAGGKASQQAAAPQPAVPGQPQQGSFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQS
PPAKKANLSPDRGSRDRKSGGRMGSPKPERQRGQNAKAPAAPADRKRPLSPQSKGSSKVTSVPGKATDTA
TAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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