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Report for CCDS39476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39476.1 Public Mus musculus 6 Zfp398 23 108 98 CCDS HistoryNCBI Gene:272347Re-query CCDS DB by CCDS ID:39476.1Re-query CCDS DB by GeneID:272347See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114598.2 ENSMUSP00000110245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114598.2Link to Ensembl Protein Viewer:ENSMUSP00000110245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114598Re-query CCDS DB by Protein ID:ENSMUSP00000110245
Original member Current member NCBI NM_173034.3 NP_766622.2 Accepted alive Link to Nucleotide Sequence:NM_173034.3Link to Protein Sequence:NP_766622.2Re-query CCDS DB by Nucleotide ID:NM_173034Re-query CCDS DB by Protein ID:NP_766622Link to BLAST:NP_766622.2

Chromosomal Locations for CCDS 39476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 47835897 47835920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47858929 47859055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47859419 47859532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47863104 47863217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47865791 47866947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGCTGAGGCGACCGCCGCTCCGGTGCCTGTGGCCTTCGATGACGTCTCCATCTACTTTTCCACCCCAG
AGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCT
CATCTCCATGGATTATGCCATGAATCAACCTGATGTTTTATCTCAGATTCAACCAGAAGGAGAACACAGT
ACAGATGACCAGCCAAGGCCAGAAGCAAGTGAGATTCCTGCAGACCCCAGTGAAGAGCCTGGCCTTTCAA
CCTCAGATATTCTGTCTTGGATTAAACAAGAGGAAGAACCTCAGGTTGGAGTCTCCCAGGAGTCTAAAGA
GAGTGAGCTGTACAAAGGTACCTATGCTGATGAAGAACTTGTCATCAAAGCTGAAGACCTTGCTAGAGCT
TCCTTGTGTCCTGAAGTTCCAGTAGCCTTCTCTGCTCCACCACCAGCAGCAGCCAAGGATGCATTTTCAG
ATATAGCTTTCAAAAGCCAGCAGTGTACCCCCATGGCACCTTTTGCACGAACGGCCACTGACCTGCCTGA
AGCTTCAGAGGGACAAGTGACTTTTACTCAGTTAGGAAGTTACCCACTCCCACCTCCAGTTGGAGAGCAG
GTGTTCTCATGCCACCATTGTGGCAAGAGTCTCAGTCAAGACATGTTAATGACACATCAGTGTGGCCATG
CTGCTGAACACCCCTTAACCTGTGCCCAGTGTCCTAAGCACTTCACCCCACAAGCAGATGTTGGTAGCAC
CTCCCAGGATCATGCCAATGAAACACCTCCCACCTGCCCTCACTGCGCCCGGACATTCACTCACCCCTCA
CGACTCACATACCACCTTCGGGTACACAACAGCACAGAGCGCCCTTTCCTCTGTCCTGATTGTCCCAAGC
GCTTCGCTGACCAGGCTCGACTCACCAGCCATCGGCGAGCTCATGCTACTGAGAGGCCCTTTCGTTGCCC
ACAGTGTGGTCGTAGCTTCAGCCTTAAGATCAGTCTCCTGCTTCATCAGAGGGGACATGCCCAGGAGCGC
CCCTTCTCCTGTCCTCAGTGTGGCATTGACTTCAATGGCCACTCTGCATTGATTCGTCACCAAATGATCC
ACACAGGCGAGCGTCCCTACCCGTGCACAGACTGTAGCAAGAGCTTCATGCGTAAGGAACACTTGCTAAA
CCACCGGAGGCTGCACACAGGTGAGCGGCCTTTCCAGTGTCCGCACTGCGGCAAGAGCTTCATCCGCAAG
CATCACCTCATGAAGCACCAGCGCATCCACACAGGCGAGCGACCATACCCCTGTGCAGTGTGCGGAAGGA
GCTTCCGCTACAAGCAGACGCTCAAGGACCACCTACGGACCGGTCACAGTGGAGGCTGTGCGGGTGATAG
GGACCCTTCCGTACAGCCACCAGACCCACCTGGTCCACTCTTAACTGCCCTGGAAACCTCTGGCCTAGGT
GTTAGCACTGAAGGTCTAGAATCTAGTCAGTGGTATGGGGAAGGGAGTGGAGGGGTGGTTTTATAG

Translation (511 aa):
MAEATAAPVPVAFDDVSIYFSTPEWEKLEEWQKELYKNIMKGNYESLISMDYAMNQPDVLSQIQPEGEHS
TDDQPRPEASEIPADPSEEPGLSTSDILSWIKQEEEPQVGVSQESKESELYKGTYADEELVIKAEDLARA
SLCPEVPVAFSAPPPAAAKDAFSDIAFKSQQCTPMAPFARTATDLPEASEGQVTFTQLGSYPLPPPVGEQ
VFSCHHCGKSLSQDMLMTHQCGHAAEHPLTCAQCPKHFTPQADVGSTSQDHANETPPTCPHCARTFTHPS
RLTYHLRVHNSTERPFLCPDCPKRFADQARLTSHRRAHATERPFRCPQCGRSFSLKISLLLHQRGHAQER
PFSCPQCGIDFNGHSALIRHQMIHTGERPYPCTDCSKSFMRKEHLLNHRRLHTGERPFQCPHCGKSFIRK
HHLMKHQRIHTGERPYPCAVCGRSFRYKQTLKDHLRTGHSGGCAGDRDPSVQPPDPPGPLLTALETSGLG
VSTEGLESSQWYGEGSGGVVL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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