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Report for CCDS19977.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19977.1 Public Mus musculus 6 Cpa1 23 108 98 CCDS HistoryNCBI Gene:109697Re-query CCDS DB by CCDS ID:19977.1Re-query CCDS DB by GeneID:109697See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19977.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031806.9 ENSMUSP00000031806.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031806.9Link to Ensembl Protein Viewer:ENSMUSP00000031806.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031806Re-query CCDS DB by Protein ID:ENSMUSP00000031806
Original member Current member NCBI NM_025350.4 NP_079626.2 Accepted alive Link to Nucleotide Sequence:NM_025350.4Link to Protein Sequence:NP_079626.2Re-query CCDS DB by Nucleotide ID:NM_025350Re-query CCDS DB by Protein ID:NP_079626Link to BLAST:NP_079626.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079626.2 419 Q7TPZ8 419 100% 0 0

Chromosomal Locations for CCDS 19977.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30639464 30639528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30639982 30640063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30640508 30640741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30640893 30640994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30641492 30641593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30641764 30641874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30642298 30642388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30642862 30643061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30643544 30643628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30645099 30645286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGAAGAGGCTGCTGGTTCTGAGTGTGCTGCTGGCAGCAGTCTTCGGCAATGAGAACTTTGTGGGGCACC
AGGTTCTCCGAATCTCTGCCACCGACGAAGCCCAGGTGCAGAAAGTGAGGGAGCTGGAGGAGTTGGAGCA
CTTGAAGTTGGACTTCTGGCGGGACCCTGCCCGGGCTGGTCTCCCCATCGATGTTCGAGTGCCCTTCCCC
ACCATCCAGTCCGTGAAAGCATTCTTGGAATATCATGATATTAGCTATGAGATCATGATCGAAGATGTGC
AGTCTCTGCTCGACGAGGAGAAGCAGCAGATGTCCGCCTTCCAGGCCAGGGCTCTGTCCACCGATGCTTT
CAATTATGCCACCTACCATACTCTGGATGAGATCTATGAATTCATGGACCTGCTGGTTACAGAGCACCCA
CAGCTTGTAAGCAAGATCCAGATCGGCAGCACCTTTGAAGGTCGTCCCATCAATGTGCTGAAGTTCAGCA
CTGGAGGGACCAATCGCCCAGCAATCTGGATTGACACTGGCATCCATTCCAGGGAGTGGGTCACTCAGGC
CAGTGGGGTCTGGTTTGCAAAAAAGATCACGAAGGACTATGGCCAGGAACCCACCCTCACGGCCATTCTT
GACAACATGGACATCTTCCTGGAGATTGTAACTAACCCTGATGGTTTTGTCTACACCCACAAAACGAATC
GCATGTGGCGCAAAACTCGATCACACACCGAGGGCTCCCTCTGCGTCGGGGTGGACCCCAACAGGAACTG
GGATGCTGCCTTTGGGATGCCCGGAGCTAGTAGCAACCCCTGCTCAGAAACTTACCGTGGCAAGTTTCCC
AACTCTGAAGTGGAGGTCAAGTCCATCGTGGACTTTGTGACGAGCCACGGGAACATCAAGGCCTTCATCT
CCATCCACAGCTACTCCCAGCTCCTTCTCTACCCCTATGGCTACACATCAGAACCAGCTCCTGACAAGGA
GGAGCTGGATCAGCTAGCAAAATCTGCTGTGACAGCCTTGACATCTCTACACGGGACCAAGTTCAAGTAT
GGCAGTATCATTGATACGATCTATCAAGCCAGTGGGAGCACTATTGACTGGACCTACAGCCAGGGCATCA
AGTATTCCTTCACTTTTGAGCTGAGGGACACTGGGCTCAGAGGTTTCCTGCTGCCTGCCTCCCAGATCAT
CCCCACAGCGGAGGAGACATGGCTGGCCCTTTTGACCATCATGGACCACACTGTCAAACACCCCTACTGA

Translation (419 aa):
MKRLLVLSVLLAAVFGNENFVGHQVLRISATDEAQVQKVRELEELEHLKLDFWRDPARAGLPIDVRVPFP
TIQSVKAFLEYHDISYEIMIEDVQSLLDEEKQQMSAFQARALSTDAFNYATYHTLDEIYEFMDLLVTEHP
QLVSKIQIGSTFEGRPINVLKFSTGGTNRPAIWIDTGIHSREWVTQASGVWFAKKITKDYGQEPTLTAIL
DNMDIFLEIVTNPDGFVYTHKTNRMWRKTRSHTEGSLCVGVDPNRNWDAAFGMPGASSNPCSETYRGKFP
NSEVEVKSIVDFVTSHGNIKAFISIHSYSQLLLYPYGYTSEPAPDKEELDQLAKSAVTALTSLHGTKFKY
GSIIDTIYQASGSTIDWTYSQGIKYSFTFELRDTGLRGFLLPASQIIPTAEETWLALLTIMDHTVKHPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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