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Report for CCDS90022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90022.1 Public Mus musculus 5 Flt1 23 108 98 CCDS HistoryNCBI Gene:14254Re-query CCDS DB by CCDS ID:90022.1Re-query CCDS DB by GeneID:14254See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110529.5 ENSMUSP00000106158.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110529.5Link to Ensembl Protein Viewer:ENSMUSP00000106158.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110529Re-query CCDS DB by Protein ID:ENSMUSP00000106158
Original member Current member NCBI NM_001363135.1 NP_001350064.1 Accepted alive Link to Nucleotide Sequence:NM_001363135.1Link to Protein Sequence:NP_001350064.1Re-query CCDS DB by Nucleotide ID:NM_001363135Re-query CCDS DB by Protein ID:NP_001350064Link to BLAST:NP_001350064.1

Chromosomal Locations for CCDS 90022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147639130 147639533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147646125 147646233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147655097 147655211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147672564 147672723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147673533 147673702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147676321 147676438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147678144 147678318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147681614 147681750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147681845 147682007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147683817 147683941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147699782 147700011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147700321 147700417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147725671 147725734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGGTCAGCTGCTGGGACACCGCGGTCTTGCCTTACGCGCTGCTCGGGTGTCTGCTTCTCACAGGATATG
GCTCAGGGTCGAAGTTAAAAGTGCCTGAACTGAGTTTAAAAGGCACCCAGCATGTCATGCAAGCAGGCCA
GACTCTCTTTCTCAAGTGCAGAGGGGAGGCAGCCCACTCATGGTCTCTGCCCACGACCGTGAGCCAGGAG
GACAAAAGGCTGAGCATCACTCCCCCATCGGCCTGTGGGAGGGATAACAGGCAATTCTGCAGCACCTTGA
CCTTGGACACGGCGCAGGCCAACCACACGGGCCTCTACACCTGTAGATACCTCCCTACATCTACTTCGAA
GAAAAAGAAAGCGGAATCTTCAATCTACATATTTGTTAGTGATGCAGGGAGTCCTTTCATAGAGATGCAC
ACTGACATACCCAAACTTGTGCACATGACGGAAGGAAGACAGCTCATCATCCCCTGCCGGGTGACGTCAC
CCAACGTCACAGTCACCCTAAAAAAGTTTCCATTTGATACTCTTACCCCTGATGGGCAAAGAATAACATG
GGACAGTAGGAGAGGCTTTATAATAGCAAATGCAACGTACAAAGAGATAGGACTGCTGAACTGCGAAGCC
ACCGTCAACGGGCACCTGTACCAGACAAACTATCTGACCCATCGGCAGACCAATACAATCCTAGATGTCC
AAATACGCCCGCCGAGCCCAGTGAGACTGCTCCACGGGCAGACTCTTGTCCTCAACTGCACCGCCACCAC
GGAGCTCAATACGAGGGTGCAAATGAGCTGGAATTACCCTGGTAAAGCAACTAAGAGAGCATCTATAAGG
CAGCGGATTGACCGGAGCCATTCCCACAACAATGTGTTCCACAGTGTTCTTAAGATCAACAATGTGGAGA
GCCGAGACAAGGGGCTCTACACCTGTCGCGTGAAGAGTGGGTCCTCGTTCCAGTCTTTCAACACCTCCGT
GCATGTGTATGAAAAAGGATTCATCAGTGTGAAACATCGGAAGCAGCCGGTGCAGGAAACCACAGCAGGA
AGACGGTCCTATCGGCTGTCCATGAAAGTGAAGGCCTTCCCCTCCCCAGAAATCGTATGGTTAAAAGATG
GCTCGCCTGCAACATTGAAGTCTGCTCGCTATTTGGTACATGGCTACTCATTAATTATCAAAGATGTGAC
AACCGAGGATGCAGGGGACTATACGATCTTGCTGGGCATAAAGCAGTCAAGGCTATTTAAAAACCTCACT
GCCACTCTCATTGTAAACGTGAAACCTCAGATCTACGAAAAGTCCGTGTCCTCGCTTCCAAGCCCACCTC
TCTATCCGCTGGGCAGCAGACAAGTCCTCACTTGCACCGTGTATGGCATCCCTCGGCCAACAATCACGTG
GCTCTGGCACCCCTGTCACCACAATCACTCCAAAGAAAGGTATGACTTCTGCACTGAGAATGAAGAATCC
TTTATCCTGGATCCCAGCAGCAACTTAGGAAACAGAATTGAGAGCATCTCTCAGCGCATGACGGTCATAG
AAGGAACAAATAAGACGGTTAGCACATTGGTGGTGGCTGACTCTCAGACCCCTGGAATCTACAGCTGCCG
GGCCTTCAATAAAATAGGGACTGTGGAAAGAAACATAAAATTTTATGTCACAGATGTGCCGAATGGCTTT
CACGTTTCCTTGGAAAAGATGCCAGCCGAAGGAGAGGACCTGAAACTGTCCTGTGTGGTCAATAAATTCC
TGTACAGAGACATTACCTGGATTCTGCTACGGACAGTTAACAACAGAACCATGCACCATAGTATCAGCAA
GCAAAAAATGGCCACCACTCAAGATTACTCCATCACTCTGAACCTTGTCATCAAGAACGTGTCTCTAGAA
GACTCGGGCACCTATGCGTGCAGAGCCAGGAACATATACACAGGGGAAGACATCCTTCGGAAGACAGAAG
TTCTCGTTAGAGGTGAGCACTGCGGCAAAAAGGCCATTTTCTCTCGGATCTCCAAATTTAAAAGCAGGAG
GAATGATTGTACCACACAAAGTCATGTCAAACATTAA

Translation (688 aa):
MVSCWDTAVLPYALLGCLLLTGYGSGSKLKVPELSLKGTQHVMQAGQTLFLKCRGEAAHSWSLPTTVSQE
DKRLSITPPSACGRDNRQFCSTLTLDTAQANHTGLYTCRYLPTSTSKKKKAESSIYIFVSDAGSPFIEMH
TDIPKLVHMTEGRQLIIPCRVTSPNVTVTLKKFPFDTLTPDGQRITWDSRRGFIIANATYKEIGLLNCEA
TVNGHLYQTNYLTHRQTNTILDVQIRPPSPVRLLHGQTLVLNCTATTELNTRVQMSWNYPGKATKRASIR
QRIDRSHSHNNVFHSVLKINNVESRDKGLYTCRVKSGSSFQSFNTSVHVYEKGFISVKHRKQPVQETTAG
RRSYRLSMKVKAFPSPEIVWLKDGSPATLKSARYLVHGYSLIIKDVTTEDAGDYTILLGIKQSRLFKNLT
ATLIVNVKPQIYEKSVSSLPSPPLYPLGSRQVLTCTVYGIPRPTITWLWHPCHHNHSKERYDFCTENEES
FILDPSSNLGNRIESISQRMTVIEGTNKTVSTLVVADSQTPGIYSCRAFNKIGTVERNIKFYVTDVPNGF
HVSLEKMPAEGEDLKLSCVVNKFLYRDITWILLRTVNNRTMHHSISKQKMATTQDYSITLNLVIKNVSLE
DSGTYACRARNIYTGEDILRKTEVLVRGEHCGKKAIFSRISKFKSRRNDCTTQSHVKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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