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Report for CCDS39291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39291.1 Public Mus musculus 5 Zfp11 23 108 98 CCDS HistoryNCBI Gene:22648Re-query CCDS DB by CCDS ID:39291.1Re-query CCDS DB by GeneID:22648See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049778.6 ENSMUSP00000051861.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049778.6Link to Ensembl Protein Viewer:ENSMUSP00000051861.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049778Re-query CCDS DB by Protein ID:ENSMUSP00000051861
Original member Current member NCBI NM_172462.4 NP_766050.1 Accepted alive Link to Nucleotide Sequence:NM_172462.4Link to Protein Sequence:NP_766050.1Re-query CCDS DB by Nucleotide ID:NM_172462Re-query CCDS DB by Protein ID:NP_766050Link to BLAST:NP_766050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766050.1 647 P10751 647 100% 0 0

Chromosomal Locations for CCDS 39291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129656452 129658385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129660770 129660779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1944 nt):
ATGTCCCCAGAGAATCTTTCTGACTGTAACAACTCTGTAAAAGACTTTGATCAACACCCAGAACTTACCA
TCCGGCAATGTGTGCACAGAGAGAAGCCGTACAAGCAGGAAGAATGTGATGACTCAGCTTGCGATCAGCA
TCTCAGGGTGCATAAAGGAGGCATGCCCTATGAATGCAAAGACTGTGGGAAAGCCTTTAAATACCGCTCG
GTCCTCTACCAACACCGCATCATTCACACGGCCGCAAGACCCTACAAATGTAAAGAGTGCGGCAAAGCTT
TCAAGAGAAGTAGAAACCTCGCTCAGCACCAGGTGACACACAAGAGGGAGAAACCACACAAGTGTGAAGA
GTGCGGCAGAGCCTTTTCTGCACTTTCTGTCCTTACTCAACACCGCATCACCCACACCGGAGAGAAGCCC
TTCAAGTGTAAAGAGTGCGGCAGAGCCTTTAAATATAACTCGACCCTTACTCAGCATGAAGTCATTCATA
CTGAAGCCAAACCCTACAGATGTCAGGAATGTGGCAAAGCCTTCAAGAGGAGCCACACGCTCAGTCAACA
CCAGGTAATTCATAAAGGGGAGAAACCGCACAAGTGTGACGAGTGTGGCAGGGCCTTCAGTAAGCACTCG
TCTCTTACACAACACCAGGTCATCCACACCGGAGAAAAGCCCTATCAGTGCAGAGAGTGCGGGAAAGCGT
TCAGGTATCAATCAACCCTTACCCGACACCACATTGTTCACACCGGCGCCAAACCCTACAAATGCCCAGA
GTGCGACAAGGCCTTCAATAACAGTTCGACCCTCAGTCGGCACCAGATAATCCACACAGGAGAGAAGCCC
TACAAGTGTCAGGAGTGCGGCCGGGCCTTCTACTGCTCCTCCTTCTTGATCCAGCATATGAAGATCCACT
TCGAGGAGATGCCCTACAGGTGCAGAGAGTGTGGCAAGCCCTTCAGGCTCTCCTCCCAGCTTATCCGACA
CCAGAGAATCCACACCGGGGAGGAGCCCTACATATGCAGAGAGTGTGGCAAGACCTTCAAGTATCAGTCA
AACCTCACCCGCCACCAGATACTTCATACCGGCGCCAAGCCCTACAAATGCCCAGAGTGCGGCAAGGCCT
TCAATAACAGTTCCACCCTCACCCGGCACCAGATAATCCACACAGGAGAGAAGCCCTACAAGTGTCAGGA
GTGCAGCAAGGCCTTCTACTGCTCCTCCTACTTGATCCAGCATATGAAGATCCACTTTGAAGAGATTCCC
TATAGATGCAAAGAATGTGGTAAACCGTTCAAGTGTTCTTCACAGCTTATCCGACACCAGAGAATCCACA
GCGGGGAGAAACCCTATATATGTAAGGAGTGCGGCAAGGCCTTCAACTGTACTTCATACCTTACTAAGCA
CCAGAGGATCCATACCGGGGAGAAACCCTACGTGTGTCAGGAGTGTGGCAAGGCCTTCAACTGTTCTTCC
TATCTCTCTAAACATCAGAGGATTCACATTGGAGACAGACTCTATAAATGTAAAGAGTGTGGCAAAGCCT
ACTACTTCTCCTCACAGCTGAACCGACATCAGAGGATCCATACCGGGGAGAAACCCTATGTGTGCCAGGA
GTGTGGCAAGGCCTTCAATTGTTCTTCATACCTTACTAAGCACCAGCGCATCCATATTGTAGAAAAACCG
TATGTGTGTAAAGAGTGCAGCAAAGCCTTTAGCTGCTCCTCATACCTGACTAAACACCAGAGGATCCATG
CTGGAGACAGGCTATACAAATGCACAGAGTGTGGCAAAGCCTACTGCTTCTCCTCACAGCTGAACCGACA
TCAGAGGATCCACACCAGAGAGAGACCCTATAGATGTAAGGAATGTGGCAAGGCCTTTATTACTTCCTCC
TGCCTTAAACGACACCAGGAAACTCACACTCTCCAGACACCAAACAGTGTATAG

Translation (647 aa):
MSPENLSDCNNSVKDFDQHPELTIRQCVHREKPYKQEECDDSACDQHLRVHKGGMPYECKDCGKAFKYRS
VLYQHRIIHTAARPYKCKECGKAFKRSRNLAQHQVTHKREKPHKCEECGRAFSALSVLTQHRITHTGEKP
FKCKECGRAFKYNSTLTQHEVIHTEAKPYRCQECGKAFKRSHTLSQHQVIHKGEKPHKCDECGRAFSKHS
SLTQHQVIHTGEKPYQCRECGKAFRYQSTLTRHHIVHTGAKPYKCPECDKAFNNSSTLSRHQIIHTGEKP
YKCQECGRAFYCSSFLIQHMKIHFEEMPYRCRECGKPFRLSSQLIRHQRIHTGEEPYICRECGKTFKYQS
NLTRHQILHTGAKPYKCPECGKAFNNSSTLTRHQIIHTGEKPYKCQECSKAFYCSSYLIQHMKIHFEEIP
YRCKECGKPFKCSSQLIRHQRIHSGEKPYICKECGKAFNCTSYLTKHQRIHTGEKPYVCQECGKAFNCSS
YLSKHQRIHIGDRLYKCKECGKAYYFSSQLNRHQRIHTGEKPYVCQECGKAFNCSSYLTKHQRIHIVEKP
YVCKECSKAFSCSSYLTKHQRIHAGDRLYKCTECGKAYCFSSQLNRHQRIHTRERPYRCKECGKAFITSS
CLKRHQETHTLQTPNSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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